Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1877 | 5854;5855;5856 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
N2AB | 1877 | 5854;5855;5856 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
N2A | 1877 | 5854;5855;5856 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
N2B | 1831 | 5716;5717;5718 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
Novex-1 | 1831 | 5716;5717;5718 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
Novex-2 | 1831 | 5716;5717;5718 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
Novex-3 | 1877 | 5854;5855;5856 | chr2:178776235;178776234;178776233 | chr2:179640962;179640961;179640960 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/I | rs1554006798 | None | 1.0 | D | 0.679 | 0.517 | 0.571828761226 | gnomAD-4.0.0 | 6.36207E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.10902E-04 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.8955 | likely_pathogenic | 0.9095 | pathogenic | -0.447 | Destabilizing | 1.0 | D | 0.627 | neutral | None | None | None | None | N |
N/C | 0.8604 | likely_pathogenic | 0.8734 | pathogenic | 0.356 | Stabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
N/D | 0.746 | likely_pathogenic | 0.7268 | pathogenic | -0.008 | Destabilizing | 0.999 | D | 0.642 | neutral | N | 0.419714987 | None | None | N |
N/E | 0.974 | likely_pathogenic | 0.9748 | pathogenic | -0.035 | Destabilizing | 0.999 | D | 0.651 | neutral | None | None | None | None | N |
N/F | 0.9868 | likely_pathogenic | 0.9897 | pathogenic | -0.753 | Destabilizing | 1.0 | D | 0.659 | neutral | None | None | None | None | N |
N/G | 0.6574 | likely_pathogenic | 0.666 | pathogenic | -0.638 | Destabilizing | 0.999 | D | 0.604 | neutral | None | None | None | None | N |
N/H | 0.6728 | likely_pathogenic | 0.689 | pathogenic | -0.711 | Destabilizing | 1.0 | D | 0.621 | neutral | D | 0.549815624 | None | None | N |
N/I | 0.9861 | likely_pathogenic | 0.9887 | pathogenic | -0.026 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | D | 0.648500453 | None | None | N |
N/K | 0.9741 | likely_pathogenic | 0.9752 | pathogenic | 0.097 | Stabilizing | 1.0 | D | 0.651 | neutral | N | 0.459480131 | None | None | N |
N/L | 0.9216 | likely_pathogenic | 0.9346 | pathogenic | -0.026 | Destabilizing | 1.0 | D | 0.693 | prob.neutral | None | None | None | None | N |
N/M | 0.9641 | likely_pathogenic | 0.971 | pathogenic | 0.459 | Stabilizing | 1.0 | D | 0.63 | neutral | None | None | None | None | N |
N/P | 0.9896 | likely_pathogenic | 0.9918 | pathogenic | -0.139 | Destabilizing | 1.0 | D | 0.664 | neutral | None | None | None | None | N |
N/Q | 0.9151 | likely_pathogenic | 0.9225 | pathogenic | -0.415 | Destabilizing | 1.0 | D | 0.641 | neutral | None | None | None | None | N |
N/R | 0.9516 | likely_pathogenic | 0.954 | pathogenic | 0.147 | Stabilizing | 1.0 | D | 0.673 | neutral | None | None | None | None | N |
N/S | 0.2889 | likely_benign | 0.2963 | benign | -0.166 | Destabilizing | 0.999 | D | 0.61 | neutral | N | 0.473069506 | None | None | N |
N/T | 0.8934 | likely_pathogenic | 0.9054 | pathogenic | -0.045 | Destabilizing | 0.999 | D | 0.651 | neutral | D | 0.608156324 | None | None | N |
N/V | 0.9763 | likely_pathogenic | 0.9808 | pathogenic | -0.139 | Destabilizing | 1.0 | D | 0.671 | neutral | None | None | None | None | N |
N/W | 0.9936 | likely_pathogenic | 0.995 | pathogenic | -0.672 | Destabilizing | 1.0 | D | 0.68 | prob.neutral | None | None | None | None | N |
N/Y | 0.8812 | likely_pathogenic | 0.8988 | pathogenic | -0.424 | Destabilizing | 1.0 | D | 0.647 | neutral | D | 0.610240681 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.