Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 18958 | 57097;57098;57099 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
N2AB | 17317 | 52174;52175;52176 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
N2A | 16390 | 49393;49394;49395 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
N2B | 9893 | 29902;29903;29904 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
Novex-1 | 10018 | 30277;30278;30279 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
Novex-2 | 10085 | 30478;30479;30480 | chr2:178598838;178598837;178598836 | chr2:179463565;179463564;179463563 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/E | None | None | 0.002 | N | 0.11 | 0.078 | 0.136095386433 | gnomAD-4.0.0 | 2.40064E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.625E-06 | 0 | 0 |
D/H | rs576158850 | -0.96 | 0.97 | N | 0.539 | 0.3 | 0.307966526162 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
D/H | rs576158850 | -0.96 | 0.97 | N | 0.539 | 0.3 | 0.307966526162 | gnomAD-4.0.0 | 6.84403E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52372E-05 | None | 0 | 0 | 0 | 0 | 0 |
D/N | rs576158850 | -0.322 | 0.91 | N | 0.479 | 0.197 | None | gnomAD-2.1.1 | 4.43E-05 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 2.79611E-04 | None | 0 | None | 0 | 4.46E-05 | 0 |
D/N | rs576158850 | -0.322 | 0.91 | N | 0.479 | 0.197 | None | gnomAD-3.1.2 | 5.92E-05 | None | None | None | None | N | None | 4.83E-05 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 7.36E-05 | 2.07297E-04 | 0 |
D/N | rs576158850 | -0.322 | 0.91 | N | 0.479 | 0.197 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
D/N | rs576158850 | -0.322 | 0.91 | N | 0.479 | 0.197 | None | gnomAD-4.0.0 | 5.64075E-05 | None | None | None | None | N | None | 5.33518E-05 | 1.66756E-05 | None | 0 | 1.11717E-04 | None | 1.56226E-05 | 0 | 6.35871E-05 | 3.29497E-05 | 3.20195E-05 |
D/V | rs2052516508 | None | 0.023 | N | 0.419 | 0.259 | 0.348983352498 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/V | rs2052516508 | None | 0.023 | N | 0.419 | 0.259 | 0.348983352498 | gnomAD-4.0.0 | 6.57843E-06 | None | None | None | None | N | None | 2.41418E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1749 | likely_benign | 0.1819 | benign | -0.268 | Destabilizing | 0.425 | N | 0.448 | neutral | N | 0.435652348 | None | None | N |
D/C | 0.5743 | likely_pathogenic | 0.6024 | pathogenic | -0.053 | Destabilizing | 0.995 | D | 0.619 | neutral | None | None | None | None | N |
D/E | 0.1197 | likely_benign | 0.1266 | benign | -0.8 | Destabilizing | 0.002 | N | 0.11 | neutral | N | 0.347107857 | None | None | N |
D/F | 0.5726 | likely_pathogenic | 0.5818 | pathogenic | -0.608 | Destabilizing | 0.893 | D | 0.607 | neutral | None | None | None | None | N |
D/G | 0.2948 | likely_benign | 0.3098 | benign | -0.554 | Destabilizing | 0.642 | D | 0.476 | neutral | N | 0.460953438 | None | None | N |
D/H | 0.2939 | likely_benign | 0.2878 | benign | -1.031 | Destabilizing | 0.97 | D | 0.539 | neutral | N | 0.479712557 | None | None | N |
D/I | 0.2574 | likely_benign | 0.246 | benign | 0.459 | Stabilizing | 0.031 | N | 0.461 | neutral | None | None | None | None | N |
D/K | 0.3762 | ambiguous | 0.3656 | ambiguous | -0.284 | Destabilizing | 0.543 | D | 0.472 | neutral | None | None | None | None | N |
D/L | 0.3371 | likely_benign | 0.3364 | benign | 0.459 | Stabilizing | 0.329 | N | 0.467 | neutral | None | None | None | None | N |
D/M | 0.4911 | ambiguous | 0.5103 | ambiguous | 0.95 | Stabilizing | 0.176 | N | 0.417 | neutral | None | None | None | None | N |
D/N | 0.0975 | likely_benign | 0.1103 | benign | -0.517 | Destabilizing | 0.91 | D | 0.479 | neutral | N | 0.443501041 | None | None | N |
D/P | 0.739 | likely_pathogenic | 0.7371 | pathogenic | 0.242 | Stabilizing | 0.944 | D | 0.543 | neutral | None | None | None | None | N |
D/Q | 0.2669 | likely_benign | 0.2652 | benign | -0.426 | Destabilizing | 0.543 | D | 0.492 | neutral | None | None | None | None | N |
D/R | 0.4164 | ambiguous | 0.3982 | ambiguous | -0.396 | Destabilizing | 0.893 | D | 0.579 | neutral | None | None | None | None | N |
D/S | 0.1191 | likely_benign | 0.1267 | benign | -0.755 | Destabilizing | 0.329 | N | 0.401 | neutral | None | None | None | None | N |
D/T | 0.1774 | likely_benign | 0.1842 | benign | -0.522 | Destabilizing | 0.031 | N | 0.255 | neutral | None | None | None | None | N |
D/V | 0.1594 | likely_benign | 0.156 | benign | 0.242 | Stabilizing | 0.023 | N | 0.419 | neutral | N | 0.426648863 | None | None | N |
D/W | 0.8868 | likely_pathogenic | 0.8922 | pathogenic | -0.716 | Destabilizing | 0.995 | D | 0.65 | neutral | None | None | None | None | N |
D/Y | 0.2676 | likely_benign | 0.2719 | benign | -0.434 | Destabilizing | 0.99 | D | 0.617 | neutral | N | 0.471074431 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.