Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19013 | 57262;57263;57264 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
N2AB | 17372 | 52339;52340;52341 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
N2A | 16445 | 49558;49559;49560 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
N2B | 9948 | 30067;30068;30069 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
Novex-1 | 10073 | 30442;30443;30444 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
Novex-2 | 10140 | 30643;30644;30645 | chr2:178598580;178598579;178598578 | chr2:179463307;179463306;179463305 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | rs991075111 | None | 0.896 | N | 0.291 | 0.201 | 0.589813230912 | gnomAD-4.0.0 | 3.43309E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.50202E-06 | 0 | 0 |
L/V | None | -0.141 | 0.002 | N | 0.103 | 0.065 | 0.115124310173 | gnomAD-2.1.1 | 4.11E-06 | None | None | None | None | I | None | 0 | 0 | None | 1.00766E-04 | 0 | None | 0 | None | 0 | 0 | 0 |
L/V | None | -0.141 | 0.002 | N | 0.103 | 0.065 | 0.115124310173 | gnomAD-4.0.0 | 2.05983E-06 | None | None | None | None | I | None | 0 | 0 | None | 7.6864E-05 | 0 | None | 0 | 0 | 0 | 0 | 1.66168E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1442 | likely_benign | 0.1597 | benign | -0.617 | Destabilizing | 0.25 | N | 0.296 | neutral | None | None | None | None | I |
L/C | 0.5157 | ambiguous | 0.5159 | ambiguous | -0.792 | Destabilizing | 0.977 | D | 0.235 | neutral | None | None | None | None | I |
L/D | 0.5654 | likely_pathogenic | 0.5886 | pathogenic | -0.104 | Destabilizing | 0.85 | D | 0.285 | neutral | None | None | None | None | I |
L/E | 0.2849 | likely_benign | 0.2728 | benign | -0.158 | Destabilizing | 0.617 | D | 0.327 | neutral | None | None | None | None | I |
L/F | 0.1534 | likely_benign | 0.1651 | benign | -0.502 | Destabilizing | 0.85 | D | 0.265 | neutral | None | None | None | None | I |
L/G | 0.3669 | ambiguous | 0.401 | ambiguous | -0.787 | Destabilizing | 0.447 | N | 0.299 | neutral | None | None | None | None | I |
L/H | 0.2603 | likely_benign | 0.2511 | benign | 0.063 | Stabilizing | 0.992 | D | 0.221 | neutral | None | None | None | None | I |
L/I | 0.0824 | likely_benign | 0.0867 | benign | -0.274 | Destabilizing | 0.08 | N | 0.29 | neutral | N | 0.479173839 | None | None | I |
L/K | 0.2747 | likely_benign | 0.2348 | benign | -0.367 | Destabilizing | 0.021 | N | 0.253 | neutral | None | None | None | None | I |
L/M | 0.0978 | likely_benign | 0.1099 | benign | -0.604 | Destabilizing | 0.85 | D | 0.289 | neutral | None | None | None | None | I |
L/N | 0.2633 | likely_benign | 0.3055 | benign | -0.29 | Destabilizing | 0.85 | D | 0.279 | neutral | None | None | None | None | I |
L/P | 0.2159 | likely_benign | 0.213 | benign | -0.358 | Destabilizing | 0.896 | D | 0.291 | neutral | N | 0.473399873 | None | None | I |
L/Q | 0.1316 | likely_benign | 0.1277 | benign | -0.429 | Destabilizing | 0.81 | D | 0.297 | neutral | N | 0.486387813 | None | None | I |
L/R | 0.266 | likely_benign | 0.2199 | benign | 0.113 | Stabilizing | 0.681 | D | 0.284 | neutral | N | 0.475016026 | None | None | I |
L/S | 0.1724 | likely_benign | 0.1864 | benign | -0.754 | Destabilizing | 0.021 | N | 0.241 | neutral | None | None | None | None | I |
L/T | 0.163 | likely_benign | 0.1801 | benign | -0.696 | Destabilizing | 0.021 | N | 0.179 | neutral | None | None | None | None | I |
L/V | 0.0767 | likely_benign | 0.0857 | benign | -0.358 | Destabilizing | 0.002 | N | 0.103 | neutral | N | 0.467071334 | None | None | I |
L/W | 0.3097 | likely_benign | 0.2738 | benign | -0.515 | Destabilizing | 0.992 | D | 0.295 | neutral | None | None | None | None | I |
L/Y | 0.3363 | likely_benign | 0.3551 | ambiguous | -0.289 | Destabilizing | 0.92 | D | 0.254 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.