Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19228 | 57907;57908;57909 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
N2AB | 17587 | 52984;52985;52986 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
N2A | 16660 | 50203;50204;50205 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
N2B | 10163 | 30712;30713;30714 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
Novex-1 | 10288 | 31087;31088;31089 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
Novex-2 | 10355 | 31288;31289;31290 | chr2:178595672;178595671;178595670 | chr2:179460399;179460398;179460397 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs757820671 | -0.35 | 0.992 | N | 0.597 | 0.458 | None | gnomAD-2.1.1 | 4.05E-05 | None | None | None | None | N | None | 1.70416E-04 | 1.15902E-04 | None | 0 | 0 | None | 0 | None | 0 | 2.42E-05 | 0 |
R/C | rs757820671 | -0.35 | 0.992 | N | 0.597 | 0.458 | None | gnomAD-3.1.2 | 4.61E-05 | None | None | None | None | N | None | 1.45145E-04 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs757820671 | -0.35 | 0.992 | N | 0.597 | 0.458 | None | gnomAD-4.0.0 | 1.67895E-05 | None | None | None | None | N | None | 1.73899E-04 | 5.05493E-05 | None | 0 | 0 | None | 0 | 0 | 6.79479E-06 | 1.11351E-05 | 3.21017E-05 |
R/H | rs114711705 | -1.232 | 0.005 | N | 0.195 | 0.107 | None | gnomAD-2.1.1 | 6.82103E-04 | None | None | None | None | N | None | 7.37866E-03 | 2.32194E-04 | None | 0 | 5.34E-05 | None | 0 | None | 0 | 0 | 4.3054E-04 |
R/H | rs114711705 | -1.232 | 0.005 | N | 0.195 | 0.107 | None | gnomAD-3.1.2 | 1.96786E-03 | None | None | None | None | N | None | 7.05484E-03 | 1.31182E-04 | 0 | 0 | 1.9425E-04 | None | 0 | 0 | 0 | 0 | 1.91205E-03 |
R/H | rs114711705 | -1.232 | 0.005 | N | 0.195 | 0.107 | None | 1000 genomes | 2.59585E-03 | None | None | None | None | N | None | 9.8E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs114711705 | -1.232 | 0.005 | N | 0.195 | 0.107 | None | gnomAD-4.0.0 | 3.97341E-04 | None | None | None | None | N | None | 7.6999E-03 | 3.03306E-04 | None | 0 | 2.25063E-05 | None | 1.56966E-05 | 0 | 6.79519E-06 | 1.11421E-05 | 5.29593E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6822 | likely_pathogenic | 0.7887 | pathogenic | -0.3 | Destabilizing | 0.272 | N | 0.385 | neutral | None | None | None | None | N |
R/C | 0.1986 | likely_benign | 0.3258 | benign | -0.245 | Destabilizing | 0.992 | D | 0.597 | neutral | N | 0.48673388 | None | None | N |
R/D | 0.8702 | likely_pathogenic | 0.9307 | pathogenic | -0.016 | Destabilizing | 0.567 | D | 0.393 | neutral | None | None | None | None | N |
R/E | 0.631 | likely_pathogenic | 0.7667 | pathogenic | 0.064 | Stabilizing | 0.157 | N | 0.309 | neutral | None | None | None | None | N |
R/F | 0.6931 | likely_pathogenic | 0.8115 | pathogenic | -0.382 | Destabilizing | 0.567 | D | 0.503 | neutral | None | None | None | None | N |
R/G | 0.3997 | ambiguous | 0.5889 | pathogenic | -0.546 | Destabilizing | 0.417 | N | 0.368 | neutral | N | 0.487459675 | None | None | N |
R/H | 0.1055 | likely_benign | 0.2433 | benign | -0.976 | Destabilizing | 0.005 | N | 0.195 | neutral | N | 0.462842727 | None | None | N |
R/I | 0.5936 | likely_pathogenic | 0.7048 | pathogenic | 0.33 | Stabilizing | 0.726 | D | 0.498 | neutral | None | None | None | None | N |
R/K | 0.1676 | likely_benign | 0.2188 | benign | -0.324 | Destabilizing | 0.133 | N | 0.359 | neutral | None | None | None | None | N |
R/L | 0.4209 | ambiguous | 0.5555 | ambiguous | 0.33 | Stabilizing | 0.417 | N | 0.379 | neutral | N | 0.479478952 | None | None | N |
R/M | 0.4684 | ambiguous | 0.6281 | pathogenic | 0.021 | Stabilizing | 0.968 | D | 0.348 | neutral | None | None | None | None | N |
R/N | 0.7211 | likely_pathogenic | 0.836 | pathogenic | 0.131 | Stabilizing | 0.157 | N | 0.293 | neutral | None | None | None | None | N |
R/P | 0.9571 | likely_pathogenic | 0.9688 | pathogenic | 0.142 | Stabilizing | 0.836 | D | 0.43 | neutral | N | 0.504546712 | None | None | N |
R/Q | 0.1311 | likely_benign | 0.1849 | benign | -0.05 | Destabilizing | 0.567 | D | 0.315 | neutral | None | None | None | None | N |
R/S | 0.6947 | likely_pathogenic | 0.8106 | pathogenic | -0.418 | Destabilizing | 0.417 | N | 0.351 | neutral | N | 0.449362646 | None | None | N |
R/T | 0.5362 | ambiguous | 0.6917 | pathogenic | -0.185 | Destabilizing | 0.567 | D | 0.336 | neutral | None | None | None | None | N |
R/V | 0.66 | likely_pathogenic | 0.7565 | pathogenic | 0.142 | Stabilizing | 0.726 | D | 0.508 | neutral | None | None | None | None | N |
R/W | 0.2859 | likely_benign | 0.4379 | ambiguous | -0.256 | Destabilizing | 0.968 | D | 0.617 | neutral | None | None | None | None | N |
R/Y | 0.5043 | ambiguous | 0.6727 | pathogenic | 0.106 | Stabilizing | 0.396 | N | 0.433 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.