Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19360 | 58303;58304;58305 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
N2AB | 17719 | 53380;53381;53382 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
N2A | 16792 | 50599;50600;50601 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
N2B | 10295 | 31108;31109;31110 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
Novex-1 | 10420 | 31483;31484;31485 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
Novex-2 | 10487 | 31684;31685;31686 | chr2:178594416;178594415;178594414 | chr2:179459143;179459142;179459141 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/N | rs761996172 | -1.446 | 0.999 | N | 0.707 | 0.296 | None | gnomAD-2.1.1 | 8.13E-06 | None | None | None | None | N | None | 6.48E-05 | 2.93E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
S/N | rs761996172 | -1.446 | 0.999 | N | 0.707 | 0.296 | None | gnomAD-4.0.0 | 3.20004E-06 | None | None | None | None | N | None | 5.69866E-05 | 2.30287E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.143 | likely_benign | 0.1122 | benign | -1.344 | Destabilizing | 0.998 | D | 0.682 | prob.neutral | None | None | None | None | N |
S/C | 0.1367 | likely_benign | 0.0962 | benign | -1.272 | Destabilizing | 1.0 | D | 0.841 | deleterious | N | 0.513209055 | None | None | N |
S/D | 0.9741 | likely_pathogenic | 0.9482 | pathogenic | -2.311 | Highly Destabilizing | 0.999 | D | 0.715 | prob.delet. | None | None | None | None | N |
S/E | 0.9505 | likely_pathogenic | 0.9211 | pathogenic | -2.104 | Highly Destabilizing | 0.999 | D | 0.682 | prob.neutral | None | None | None | None | N |
S/F | 0.6261 | likely_pathogenic | 0.4726 | ambiguous | -0.977 | Destabilizing | 1.0 | D | 0.881 | deleterious | None | None | None | None | N |
S/G | 0.3741 | ambiguous | 0.2542 | benign | -1.675 | Destabilizing | 0.999 | D | 0.712 | prob.delet. | N | 0.494739732 | None | None | N |
S/H | 0.8084 | likely_pathogenic | 0.7212 | pathogenic | -1.767 | Destabilizing | 1.0 | D | 0.846 | deleterious | None | None | None | None | N |
S/I | 0.4245 | ambiguous | 0.3414 | ambiguous | -0.497 | Destabilizing | 1.0 | D | 0.844 | deleterious | N | 0.448600216 | None | None | N |
S/K | 0.9682 | likely_pathogenic | 0.9377 | pathogenic | -0.782 | Destabilizing | 0.999 | D | 0.701 | prob.neutral | None | None | None | None | N |
S/L | 0.302 | likely_benign | 0.223 | benign | -0.497 | Destabilizing | 1.0 | D | 0.797 | deleterious | None | None | None | None | N |
S/M | 0.3672 | ambiguous | 0.3053 | benign | -0.815 | Destabilizing | 1.0 | D | 0.845 | deleterious | None | None | None | None | N |
S/N | 0.6997 | likely_pathogenic | 0.5288 | ambiguous | -1.47 | Destabilizing | 0.999 | D | 0.707 | prob.neutral | N | 0.479255597 | None | None | N |
S/P | 0.9967 | likely_pathogenic | 0.9939 | pathogenic | -0.752 | Destabilizing | 1.0 | D | 0.827 | deleterious | None | None | None | None | N |
S/Q | 0.8495 | likely_pathogenic | 0.7875 | pathogenic | -1.194 | Destabilizing | 1.0 | D | 0.803 | deleterious | None | None | None | None | N |
S/R | 0.9333 | likely_pathogenic | 0.8705 | pathogenic | -1.052 | Destabilizing | 1.0 | D | 0.835 | deleterious | N | 0.420277464 | None | None | N |
S/T | 0.2272 | likely_benign | 0.1615 | benign | -1.11 | Destabilizing | 0.999 | D | 0.683 | prob.neutral | N | 0.478613692 | None | None | N |
S/V | 0.4196 | ambiguous | 0.3323 | benign | -0.752 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
S/W | 0.7623 | likely_pathogenic | 0.6829 | pathogenic | -1.309 | Destabilizing | 1.0 | D | 0.855 | deleterious | None | None | None | None | N |
S/Y | 0.6165 | likely_pathogenic | 0.4737 | ambiguous | -0.912 | Destabilizing | 1.0 | D | 0.874 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.