Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 19364 | 58315;58316;58317 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
N2AB | 17723 | 53392;53393;53394 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
N2A | 16796 | 50611;50612;50613 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
N2B | 10299 | 31120;31121;31122 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
Novex-1 | 10424 | 31495;31496;31497 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
Novex-2 | 10491 | 31696;31697;31698 | chr2:178594404;178594403;178594402 | chr2:179459131;179459130;179459129 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/M | rs182489815 | -0.303 | 0.988 | N | 0.307 | 0.151 | None | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | I | None | 6.49E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/M | rs182489815 | -0.303 | 0.988 | N | 0.307 | 0.151 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/M | rs182489815 | -0.303 | 0.988 | N | 0.307 | 0.151 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
I/M | rs182489815 | -0.303 | 0.988 | N | 0.307 | 0.151 | None | gnomAD-4.0.0 | 1.31392E-05 | None | None | None | None | I | None | 4.81255E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/N | rs1239668517 | 0.074 | 0.988 | N | 0.491 | 0.356 | 0.757756501284 | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.99E-06 | 0 |
I/N | rs1239668517 | 0.074 | 0.988 | N | 0.491 | 0.356 | 0.757756501284 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/N | rs1239668517 | 0.074 | 0.988 | N | 0.491 | 0.356 | 0.757756501284 | gnomAD-4.0.0 | 4.35677E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.9529E-06 | 0 | 0 |
I/V | rs1472130936 | -0.084 | 0.061 | N | 0.12 | 0.079 | 0.400613892164 | gnomAD-2.1.1 | 4.09E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.43E-05 | None | 0 | 0 | 0 |
I/V | rs1472130936 | -0.084 | 0.061 | N | 0.12 | 0.079 | 0.400613892164 | gnomAD-4.0.0 | 3.21792E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.91724E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.1643 | likely_benign | 0.1985 | benign | -0.641 | Destabilizing | 0.863 | D | 0.437 | neutral | None | None | None | None | I |
I/C | 0.629 | likely_pathogenic | 0.7019 | pathogenic | -0.876 | Destabilizing | 0.999 | D | 0.393 | neutral | None | None | None | None | I |
I/D | 0.5397 | ambiguous | 0.5875 | pathogenic | -0.078 | Destabilizing | 0.884 | D | 0.543 | neutral | None | None | None | None | I |
I/E | 0.3052 | likely_benign | 0.3744 | ambiguous | -0.154 | Destabilizing | 0.17 | N | 0.283 | neutral | None | None | None | None | I |
I/F | 0.2277 | likely_benign | 0.2332 | benign | -0.545 | Destabilizing | 0.988 | D | 0.302 | neutral | N | 0.518980234 | None | None | I |
I/G | 0.5149 | ambiguous | 0.5929 | pathogenic | -0.8 | Destabilizing | 0.969 | D | 0.503 | neutral | None | None | None | None | I |
I/H | 0.4668 | ambiguous | 0.5132 | ambiguous | 0.015 | Stabilizing | 0.991 | D | 0.471 | neutral | None | None | None | None | I |
I/K | 0.2772 | likely_benign | 0.3013 | benign | -0.418 | Destabilizing | 0.884 | D | 0.528 | neutral | None | None | None | None | I |
I/L | 0.1191 | likely_benign | 0.1254 | benign | -0.343 | Destabilizing | 0.509 | D | 0.234 | neutral | N | 0.453083316 | None | None | I |
I/M | 0.0912 | likely_benign | 0.0982 | benign | -0.504 | Destabilizing | 0.988 | D | 0.307 | neutral | N | 0.481539354 | None | None | I |
I/N | 0.2549 | likely_benign | 0.2832 | benign | -0.372 | Destabilizing | 0.988 | D | 0.491 | neutral | N | 0.461566726 | None | None | I |
I/P | 0.6087 | likely_pathogenic | 0.6305 | pathogenic | -0.41 | Destabilizing | 0.997 | D | 0.49 | neutral | None | None | None | None | I |
I/Q | 0.3 | likely_benign | 0.352 | ambiguous | -0.55 | Destabilizing | 0.2 | N | 0.264 | neutral | None | None | None | None | I |
I/R | 0.257 | likely_benign | 0.2624 | benign | 0.123 | Stabilizing | 0.939 | D | 0.493 | neutral | None | None | None | None | I |
I/S | 0.216 | likely_benign | 0.2511 | benign | -0.849 | Destabilizing | 0.92 | D | 0.495 | neutral | N | 0.380855071 | None | None | I |
I/T | 0.128 | likely_benign | 0.1413 | benign | -0.814 | Destabilizing | 0.92 | D | 0.422 | neutral | N | 0.451176374 | None | None | I |
I/V | 0.0686 | likely_benign | 0.0699 | benign | -0.41 | Destabilizing | 0.061 | N | 0.12 | neutral | N | 0.430398457 | None | None | I |
I/W | 0.8247 | likely_pathogenic | 0.8212 | pathogenic | -0.547 | Destabilizing | 0.999 | D | 0.501 | neutral | None | None | None | None | I |
I/Y | 0.5689 | likely_pathogenic | 0.5832 | pathogenic | -0.32 | Destabilizing | 0.997 | D | 0.411 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.