Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20003 | 60232;60233;60234 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
N2AB | 18362 | 55309;55310;55311 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
N2A | 17435 | 52528;52529;52530 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
N2B | 10938 | 33037;33038;33039 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
Novex-1 | 11063 | 33412;33413;33414 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
Novex-2 | 11130 | 33613;33614;33615 | chr2:178591812;178591811;178591810 | chr2:179456539;179456538;179456537 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs1039014549 | -0.049 | 1.0 | N | 0.749 | 0.453 | 0.403896168776 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/C | rs1039014549 | -0.049 | 1.0 | N | 0.749 | 0.453 | 0.403896168776 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/C | rs1039014549 | -0.049 | 1.0 | N | 0.749 | 0.453 | 0.403896168776 | gnomAD-4.0.0 | 9.91863E-06 | None | None | None | None | I | None | 8.01282E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 5.93432E-06 | 3.29468E-05 | 0 |
R/G | rs1039014549 | -0.337 | 1.0 | N | 0.575 | 0.421 | 0.358134431457 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/G | rs1039014549 | -0.337 | 1.0 | N | 0.575 | 0.421 | 0.358134431457 | gnomAD-4.0.0 | 1.36882E-06 | None | None | None | None | I | None | 0 | 2.23864E-05 | None | 0 | 0 | None | 0 | 0 | 8.99607E-07 | 0 | 0 |
R/H | rs756091180 | -0.685 | 1.0 | N | 0.737 | 0.393 | 0.376216005999 | gnomAD-2.1.1 | 1.79E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 4E-05 | 1.57E-05 | 0 |
R/H | rs756091180 | -0.685 | 1.0 | N | 0.737 | 0.393 | 0.376216005999 | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 2.82486E-04 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs756091180 | -0.685 | 1.0 | N | 0.737 | 0.393 | 0.376216005999 | gnomAD-4.0.0 | 2.41762E-05 | None | None | None | None | I | None | 4.00598E-05 | 0 | None | 0 | 0 | None | 1.09361E-04 | 0 | 2.11941E-05 | 3.2946E-05 | 1.60174E-05 |
R/P | None | None | 1.0 | N | 0.686 | 0.391 | 0.401185642668 | gnomAD-4.0.0 | 6.84407E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99612E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7947 | likely_pathogenic | 0.8258 | pathogenic | 0.001 | Stabilizing | 0.999 | D | 0.575 | neutral | None | None | None | None | I |
R/C | 0.4893 | ambiguous | 0.5069 | ambiguous | -0.017 | Destabilizing | 1.0 | D | 0.749 | deleterious | N | 0.469123378 | None | None | I |
R/D | 0.8625 | likely_pathogenic | 0.8852 | pathogenic | -0.084 | Destabilizing | 1.0 | D | 0.691 | prob.neutral | None | None | None | None | I |
R/E | 0.682 | likely_pathogenic | 0.7242 | pathogenic | -0.033 | Destabilizing | 0.999 | D | 0.613 | neutral | None | None | None | None | I |
R/F | 0.7923 | likely_pathogenic | 0.8114 | pathogenic | -0.238 | Destabilizing | 1.0 | D | 0.704 | prob.neutral | None | None | None | None | I |
R/G | 0.6497 | likely_pathogenic | 0.6718 | pathogenic | -0.185 | Destabilizing | 1.0 | D | 0.575 | neutral | N | 0.498698175 | None | None | I |
R/H | 0.2171 | likely_benign | 0.2236 | benign | -0.675 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | N | 0.454715325 | None | None | I |
R/I | 0.6213 | likely_pathogenic | 0.6717 | pathogenic | 0.452 | Stabilizing | 1.0 | D | 0.705 | prob.neutral | None | None | None | None | I |
R/K | 0.2974 | likely_benign | 0.3044 | benign | -0.001 | Destabilizing | 0.998 | D | 0.463 | neutral | None | None | None | None | I |
R/L | 0.6297 | likely_pathogenic | 0.6619 | pathogenic | 0.452 | Stabilizing | 1.0 | D | 0.575 | neutral | N | 0.474762523 | None | None | I |
R/M | 0.6172 | likely_pathogenic | 0.6618 | pathogenic | 0.123 | Stabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | I |
R/N | 0.8088 | likely_pathogenic | 0.8199 | pathogenic | 0.317 | Stabilizing | 1.0 | D | 0.693 | prob.neutral | None | None | None | None | I |
R/P | 0.9744 | likely_pathogenic | 0.9785 | pathogenic | 0.322 | Stabilizing | 1.0 | D | 0.686 | prob.neutral | N | 0.492233563 | None | None | I |
R/Q | 0.2772 | likely_benign | 0.2899 | benign | 0.167 | Stabilizing | 1.0 | D | 0.691 | prob.neutral | None | None | None | None | I |
R/S | 0.8 | likely_pathogenic | 0.8177 | pathogenic | -0.038 | Destabilizing | 1.0 | D | 0.623 | neutral | N | 0.446133127 | None | None | I |
R/T | 0.6243 | likely_pathogenic | 0.6686 | pathogenic | 0.138 | Stabilizing | 1.0 | D | 0.617 | neutral | None | None | None | None | I |
R/V | 0.7184 | likely_pathogenic | 0.7569 | pathogenic | 0.322 | Stabilizing | 1.0 | D | 0.685 | prob.neutral | None | None | None | None | I |
R/W | 0.3349 | likely_benign | 0.3447 | ambiguous | -0.286 | Destabilizing | 1.0 | D | 0.769 | deleterious | None | None | None | None | I |
R/Y | 0.5917 | likely_pathogenic | 0.6106 | pathogenic | 0.12 | Stabilizing | 1.0 | D | 0.708 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.