Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 20701 | 62326;62327;62328 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
N2AB | 19060 | 57403;57404;57405 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
N2A | 18133 | 54622;54623;54624 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
N2B | 11636 | 35131;35132;35133 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
Novex-1 | 11761 | 35506;35507;35508 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
Novex-2 | 11828 | 35707;35708;35709 | chr2:178589624;178589623;178589622 | chr2:179454351;179454350;179454349 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/Q | rs1383995916 | None | 1.0 | N | 0.796 | 0.428 | 0.73673398233 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/Q | rs1383995916 | None | 1.0 | N | 0.796 | 0.428 | 0.73673398233 | gnomAD-4.0.0 | 6.57549E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47111E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.4771 | ambiguous | 0.4387 | ambiguous | -0.935 | Destabilizing | 0.998 | D | 0.654 | neutral | None | None | None | None | N |
L/C | 0.7492 | likely_pathogenic | 0.7205 | pathogenic | -0.502 | Destabilizing | 1.0 | D | 0.735 | prob.delet. | None | None | None | None | N |
L/D | 0.8936 | likely_pathogenic | 0.852 | pathogenic | -0.552 | Destabilizing | 1.0 | D | 0.822 | deleterious | None | None | None | None | N |
L/E | 0.6164 | likely_pathogenic | 0.5551 | ambiguous | -0.648 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
L/F | 0.3145 | likely_benign | 0.31 | benign | -0.937 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
L/G | 0.8276 | likely_pathogenic | 0.7936 | pathogenic | -1.131 | Destabilizing | 1.0 | D | 0.805 | deleterious | None | None | None | None | N |
L/H | 0.4731 | ambiguous | 0.4164 | ambiguous | -0.416 | Destabilizing | 1.0 | D | 0.796 | deleterious | None | None | None | None | N |
L/I | 0.0891 | likely_benign | 0.0766 | benign | -0.53 | Destabilizing | 0.813 | D | 0.197 | neutral | None | None | None | None | N |
L/K | 0.4236 | ambiguous | 0.4086 | ambiguous | -0.484 | Destabilizing | 1.0 | D | 0.803 | deleterious | None | None | None | None | N |
L/M | 0.1564 | likely_benign | 0.1667 | benign | -0.312 | Destabilizing | 0.999 | D | 0.708 | prob.delet. | N | 0.502363509 | None | None | N |
L/N | 0.593 | likely_pathogenic | 0.4934 | ambiguous | -0.152 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
L/P | 0.9503 | likely_pathogenic | 0.9421 | pathogenic | -0.632 | Destabilizing | 1.0 | D | 0.813 | deleterious | N | 0.502363509 | None | None | N |
L/Q | 0.2969 | likely_benign | 0.2622 | benign | -0.447 | Destabilizing | 1.0 | D | 0.796 | deleterious | N | 0.499741112 | None | None | N |
L/R | 0.4043 | ambiguous | 0.3775 | ambiguous | 0.161 | Stabilizing | 1.0 | D | 0.815 | deleterious | N | 0.510688825 | None | None | N |
L/S | 0.5735 | likely_pathogenic | 0.4935 | ambiguous | -0.618 | Destabilizing | 1.0 | D | 0.815 | deleterious | None | None | None | None | N |
L/T | 0.3171 | likely_benign | 0.2539 | benign | -0.608 | Destabilizing | 1.0 | D | 0.723 | prob.delet. | None | None | None | None | N |
L/V | 0.1123 | likely_benign | 0.1055 | benign | -0.632 | Destabilizing | 0.981 | D | 0.471 | neutral | N | 0.521847181 | None | None | N |
L/W | 0.6413 | likely_pathogenic | 0.6228 | pathogenic | -0.928 | Destabilizing | 1.0 | D | 0.793 | deleterious | None | None | None | None | N |
L/Y | 0.5864 | likely_pathogenic | 0.5895 | pathogenic | -0.692 | Destabilizing | 1.0 | D | 0.798 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.