Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2099 | 6520;6521;6522 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
N2AB | 2099 | 6520;6521;6522 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
N2A | 2099 | 6520;6521;6522 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
N2B | 2053 | 6382;6383;6384 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
Novex-1 | 2053 | 6382;6383;6384 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
Novex-2 | 2053 | 6382;6383;6384 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
Novex-3 | 2099 | 6520;6521;6522 | chr2:178775569;178775568;178775567 | chr2:179640296;179640295;179640294 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/F | rs1055695339 | None | 0.82 | D | 0.817 | 0.614 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 7.24E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/F | rs1055695339 | None | 0.82 | D | 0.817 | 0.614 | None | gnomAD-4.0.0 | 1.97182E-05 | None | None | None | None | N | None | 7.23798E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.8325 | likely_pathogenic | 0.858 | pathogenic | -2.287 | Highly Destabilizing | 0.517 | D | 0.682 | prob.neutral | N | 0.503881984 | None | None | N |
V/C | 0.8893 | likely_pathogenic | 0.8976 | pathogenic | -1.651 | Destabilizing | 0.054 | N | 0.681 | prob.neutral | None | None | None | None | N |
V/D | 0.9987 | likely_pathogenic | 0.999 | pathogenic | -3.296 | Highly Destabilizing | 0.983 | D | 0.89 | deleterious | D | 0.683986142 | None | None | N |
V/E | 0.9954 | likely_pathogenic | 0.9962 | pathogenic | -3.03 | Highly Destabilizing | 0.961 | D | 0.855 | deleterious | None | None | None | None | N |
V/F | 0.9127 | likely_pathogenic | 0.9385 | pathogenic | -1.355 | Destabilizing | 0.82 | D | 0.817 | deleterious | D | 0.684728904 | None | None | N |
V/G | 0.8958 | likely_pathogenic | 0.9156 | pathogenic | -2.827 | Highly Destabilizing | 0.949 | D | 0.877 | deleterious | D | 0.581337849 | None | None | N |
V/H | 0.9988 | likely_pathogenic | 0.9991 | pathogenic | -2.699 | Highly Destabilizing | 0.996 | D | 0.892 | deleterious | None | None | None | None | N |
V/I | 0.1557 | likely_benign | 0.1701 | benign | -0.736 | Destabilizing | 0.034 | N | 0.353 | neutral | D | 0.593814737 | None | None | N |
V/K | 0.9979 | likely_pathogenic | 0.9981 | pathogenic | -1.993 | Destabilizing | 0.961 | D | 0.851 | deleterious | None | None | None | None | N |
V/L | 0.5079 | ambiguous | 0.6257 | pathogenic | -0.736 | Destabilizing | 0.008 | N | 0.403 | neutral | D | 0.624314152 | None | None | N |
V/M | 0.7133 | likely_pathogenic | 0.7719 | pathogenic | -0.808 | Destabilizing | 0.923 | D | 0.673 | neutral | None | None | None | None | N |
V/N | 0.9937 | likely_pathogenic | 0.9949 | pathogenic | -2.495 | Highly Destabilizing | 0.987 | D | 0.885 | deleterious | None | None | None | None | N |
V/P | 0.9985 | likely_pathogenic | 0.9987 | pathogenic | -1.233 | Destabilizing | 0.987 | D | 0.853 | deleterious | None | None | None | None | N |
V/Q | 0.9945 | likely_pathogenic | 0.9955 | pathogenic | -2.256 | Highly Destabilizing | 0.987 | D | 0.875 | deleterious | None | None | None | None | N |
V/R | 0.9958 | likely_pathogenic | 0.9965 | pathogenic | -1.865 | Destabilizing | 0.961 | D | 0.881 | deleterious | None | None | None | None | N |
V/S | 0.9625 | likely_pathogenic | 0.9689 | pathogenic | -2.992 | Highly Destabilizing | 0.961 | D | 0.831 | deleterious | None | None | None | None | N |
V/T | 0.8866 | likely_pathogenic | 0.9038 | pathogenic | -2.596 | Highly Destabilizing | 0.775 | D | 0.732 | prob.delet. | None | None | None | None | N |
V/W | 0.9993 | likely_pathogenic | 0.9995 | pathogenic | -1.996 | Destabilizing | 0.996 | D | 0.879 | deleterious | None | None | None | None | N |
V/Y | 0.9946 | likely_pathogenic | 0.9963 | pathogenic | -1.628 | Destabilizing | 0.961 | D | 0.799 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.