Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21146 | 63661;63662;63663 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
N2AB | 19505 | 58738;58739;58740 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
N2A | 18578 | 55957;55958;55959 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
N2B | 12081 | 36466;36467;36468 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
Novex-1 | 12206 | 36841;36842;36843 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
Novex-2 | 12273 | 37042;37043;37044 | chr2:178587971;178587970;178587969 | chr2:179452698;179452697;179452696 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/Y | rs373360112 | -1.355 | 0.975 | N | 0.741 | 0.325 | None | gnomAD-2.1.1 | 1.22E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.7E-05 | 0 |
C/Y | rs373360112 | -1.355 | 0.975 | N | 0.741 | 0.325 | None | gnomAD-4.0.0 | 4.11121E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.60081E-06 | 0 | 3.31862E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/A | 0.3148 | likely_benign | 0.3196 | benign | -1.656 | Destabilizing | 0.085 | N | 0.459 | neutral | None | None | None | None | N |
C/D | 0.8719 | likely_pathogenic | 0.8697 | pathogenic | -1.818 | Destabilizing | 0.495 | N | 0.695 | prob.neutral | None | None | None | None | N |
C/E | 0.8852 | likely_pathogenic | 0.8834 | pathogenic | -1.599 | Destabilizing | 0.704 | D | 0.707 | prob.neutral | None | None | None | None | N |
C/F | 0.225 | likely_benign | 0.2143 | benign | -1.034 | Destabilizing | 0.975 | D | 0.741 | deleterious | N | 0.433708121 | None | None | N |
C/G | 0.288 | likely_benign | 0.2873 | benign | -1.976 | Destabilizing | 0.27 | N | 0.717 | prob.delet. | N | 0.51109147 | None | None | N |
C/H | 0.5458 | ambiguous | 0.5394 | ambiguous | -2.245 | Highly Destabilizing | 0.981 | D | 0.726 | prob.delet. | None | None | None | None | N |
C/I | 0.5825 | likely_pathogenic | 0.5541 | ambiguous | -0.794 | Destabilizing | 0.828 | D | 0.719 | prob.delet. | None | None | None | None | N |
C/K | 0.8391 | likely_pathogenic | 0.8469 | pathogenic | -1.497 | Destabilizing | 0.495 | N | 0.693 | prob.neutral | None | None | None | None | N |
C/L | 0.4493 | ambiguous | 0.4512 | ambiguous | -0.794 | Destabilizing | 0.495 | N | 0.666 | neutral | None | None | None | None | N |
C/M | 0.5309 | ambiguous | 0.521 | ambiguous | -0.392 | Destabilizing | 0.981 | D | 0.72 | prob.delet. | None | None | None | None | N |
C/N | 0.6045 | likely_pathogenic | 0.5949 | pathogenic | -1.978 | Destabilizing | 0.704 | D | 0.712 | prob.delet. | None | None | None | None | N |
C/P | 0.9946 | likely_pathogenic | 0.9954 | pathogenic | -1.061 | Destabilizing | 0.828 | D | 0.741 | deleterious | None | None | None | None | N |
C/Q | 0.6434 | likely_pathogenic | 0.6461 | pathogenic | -1.532 | Destabilizing | 0.828 | D | 0.741 | deleterious | None | None | None | None | N |
C/R | 0.5224 | ambiguous | 0.5254 | ambiguous | -1.829 | Destabilizing | 0.642 | D | 0.741 | deleterious | N | 0.397592606 | None | None | N |
C/S | 0.1942 | likely_benign | 0.1821 | benign | -2.256 | Highly Destabilizing | 0.003 | N | 0.368 | neutral | N | 0.35470862 | None | None | N |
C/T | 0.3907 | ambiguous | 0.3697 | ambiguous | -1.879 | Destabilizing | 0.329 | N | 0.663 | neutral | None | None | None | None | N |
C/V | 0.4765 | ambiguous | 0.4606 | ambiguous | -1.061 | Destabilizing | 0.495 | N | 0.662 | neutral | None | None | None | None | N |
C/W | 0.5721 | likely_pathogenic | 0.5563 | ambiguous | -1.515 | Destabilizing | 0.993 | D | 0.707 | prob.neutral | N | 0.511438186 | None | None | N |
C/Y | 0.3638 | ambiguous | 0.3522 | ambiguous | -1.284 | Destabilizing | 0.975 | D | 0.741 | deleterious | N | 0.452408525 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.