Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2139 | 6640;6641;6642 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
N2AB | 2139 | 6640;6641;6642 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
N2A | 2139 | 6640;6641;6642 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
N2B | 2093 | 6502;6503;6504 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
Novex-1 | 2093 | 6502;6503;6504 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
Novex-2 | 2093 | 6502;6503;6504 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
Novex-3 | 2139 | 6640;6641;6642 | chr2:178775449;178775448;178775447 | chr2:179640176;179640175;179640174 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/T | rs1250660325 | None | 1.0 | N | 0.685 | 0.512 | 0.507331908393 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/T | rs1250660325 | None | 1.0 | N | 0.685 | 0.512 | 0.507331908393 | gnomAD-4.0.0 | 6.57333E-06 | None | None | None | None | N | None | 0 | 6.5505E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7702 | likely_pathogenic | 0.8004 | pathogenic | -0.993 | Destabilizing | 0.999 | D | 0.607 | neutral | None | None | None | None | N |
R/C | 0.4656 | ambiguous | 0.4805 | ambiguous | -0.864 | Destabilizing | 1.0 | D | 0.691 | prob.neutral | None | None | None | None | N |
R/D | 0.9165 | likely_pathogenic | 0.9297 | pathogenic | -0.27 | Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
R/E | 0.6713 | likely_pathogenic | 0.6892 | pathogenic | -0.08 | Destabilizing | 0.999 | D | 0.63 | neutral | None | None | None | None | N |
R/F | 0.9233 | likely_pathogenic | 0.9235 | pathogenic | -0.384 | Destabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | N |
R/G | 0.6091 | likely_pathogenic | 0.6467 | pathogenic | -1.377 | Destabilizing | 1.0 | D | 0.657 | neutral | D | 0.542749408 | None | None | N |
R/H | 0.1971 | likely_benign | 0.2039 | benign | -1.584 | Destabilizing | 1.0 | D | 0.697 | prob.neutral | None | None | None | None | N |
R/I | 0.7908 | likely_pathogenic | 0.791 | pathogenic | 0.076 | Stabilizing | 1.0 | D | 0.721 | prob.delet. | N | 0.50787821 | None | None | N |
R/K | 0.1633 | likely_benign | 0.1598 | benign | -0.874 | Destabilizing | 0.997 | D | 0.503 | neutral | N | 0.481527145 | None | None | N |
R/L | 0.6466 | likely_pathogenic | 0.6619 | pathogenic | 0.076 | Stabilizing | 1.0 | D | 0.657 | neutral | None | None | None | None | N |
R/M | 0.7435 | likely_pathogenic | 0.7366 | pathogenic | -0.386 | Destabilizing | 1.0 | D | 0.678 | prob.neutral | None | None | None | None | N |
R/N | 0.8483 | likely_pathogenic | 0.8581 | pathogenic | -0.615 | Destabilizing | 1.0 | D | 0.714 | prob.delet. | None | None | None | None | N |
R/P | 0.9258 | likely_pathogenic | 0.9348 | pathogenic | -0.261 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | N |
R/Q | 0.1805 | likely_benign | 0.1832 | benign | -0.56 | Destabilizing | 1.0 | D | 0.706 | prob.neutral | None | None | None | None | N |
R/S | 0.7861 | likely_pathogenic | 0.8112 | pathogenic | -1.356 | Destabilizing | 1.0 | D | 0.697 | prob.neutral | N | 0.495595166 | None | None | N |
R/T | 0.5983 | likely_pathogenic | 0.6214 | pathogenic | -0.951 | Destabilizing | 1.0 | D | 0.685 | prob.neutral | N | 0.500555274 | None | None | N |
R/V | 0.8014 | likely_pathogenic | 0.8103 | pathogenic | -0.261 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
R/W | 0.5268 | ambiguous | 0.5216 | ambiguous | 0.013 | Stabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | N |
R/Y | 0.807 | likely_pathogenic | 0.8107 | pathogenic | 0.238 | Stabilizing | 1.0 | D | 0.705 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.