Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21839 | 65740;65741;65742 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
N2AB | 20198 | 60817;60818;60819 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
N2A | 19271 | 58036;58037;58038 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
N2B | 12774 | 38545;38546;38547 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
Novex-1 | 12899 | 38920;38921;38922 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
Novex-2 | 12966 | 39121;39122;39123 | chr2:178583667;178583666;178583665 | chr2:179448394;179448393;179448392 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/E | None | None | 0.976 | N | 0.549 | 0.37 | 0.573444017615 | gnomAD-4.0.0 | 1.36988E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80006E-06 | 0 | 0 |
A/T | rs56378177 | -0.315 | 0.929 | N | 0.505 | 0.193 | None | gnomAD-2.1.1 | 6.82E-05 | None | None | None | None | I | None | 1.66099E-04 | 2.84E-05 | None | 0 | 2.6058E-04 | None | 1.97628E-04 | None | 0 | 2.35E-05 | 0 |
A/T | rs56378177 | -0.315 | 0.929 | N | 0.505 | 0.193 | None | gnomAD-3.1.2 | 8.55E-05 | None | None | None | None | I | None | 2.17192E-04 | 0 | 0 | 0 | 1.94099E-04 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
A/T | rs56378177 | -0.315 | 0.929 | N | 0.505 | 0.193 | None | gnomAD-4.0.0 | 5.64476E-05 | None | None | None | None | I | None | 1.46714E-04 | 0 | None | 0 | 3.81286E-04 | None | 0 | 3.32779E-04 | 3.73182E-05 | 1.32109E-04 | 8.01667E-05 |
A/V | rs55948748 | -0.036 | 0.159 | N | 0.315 | 0.119 | None | gnomAD-2.1.1 | 4.4563E-03 | None | None | None | None | I | None | 4.36986E-02 | 2.84447E-03 | None | 1.74825E-03 | 0 | None | 3.29E-05 | None | 4.01E-05 | 4.23842E-04 | 2.12344E-03 |
A/V | rs55948748 | -0.036 | 0.159 | N | 0.315 | 0.119 | None | gnomAD-3.1.2 | 1.22502E-02 | None | None | None | None | I | None | 4.16848E-02 | 5.37634E-03 | 0 | 1.7301E-03 | 0 | None | 0 | 0 | 3.97106E-04 | 0 | 1.00575E-02 |
A/V | rs55948748 | -0.036 | 0.159 | N | 0.315 | 0.119 | None | 1000 genomes | 1.41773E-02 | None | None | None | None | I | None | 5.07E-02 | 4.3E-03 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
A/V | rs55948748 | -0.036 | 0.159 | N | 0.315 | 0.119 | None | gnomAD-4.0.0 | 2.49612E-03 | None | None | None | None | I | None | 4.33646E-02 | 3.62258E-03 | None | 1.59096E-03 | 0 | None | 0 | 3.32557E-03 | 2.46808E-04 | 4.40315E-05 | 3.1257E-03 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.8079 | likely_pathogenic | 0.7466 | pathogenic | -0.766 | Destabilizing | 0.998 | D | 0.561 | neutral | None | None | None | None | I |
A/D | 0.8956 | likely_pathogenic | 0.8035 | pathogenic | -0.336 | Destabilizing | 0.956 | D | 0.641 | neutral | None | None | None | None | I |
A/E | 0.8284 | likely_pathogenic | 0.746 | pathogenic | -0.49 | Destabilizing | 0.976 | D | 0.549 | neutral | N | 0.510534109 | None | None | I |
A/F | 0.7693 | likely_pathogenic | 0.6773 | pathogenic | -0.887 | Destabilizing | 0.956 | D | 0.651 | neutral | None | None | None | None | I |
A/G | 0.422 | ambiguous | 0.3271 | benign | -0.335 | Destabilizing | 0.855 | D | 0.455 | neutral | N | 0.471450328 | None | None | I |
A/H | 0.8836 | likely_pathogenic | 0.8193 | pathogenic | -0.377 | Destabilizing | 0.998 | D | 0.635 | neutral | None | None | None | None | I |
A/I | 0.5903 | likely_pathogenic | 0.4692 | ambiguous | -0.346 | Destabilizing | 0.787 | D | 0.552 | neutral | None | None | None | None | I |
A/K | 0.9027 | likely_pathogenic | 0.8391 | pathogenic | -0.588 | Destabilizing | 0.956 | D | 0.548 | neutral | None | None | None | None | I |
A/L | 0.4382 | ambiguous | 0.3571 | ambiguous | -0.346 | Destabilizing | 0.754 | D | 0.507 | neutral | None | None | None | None | I |
A/M | 0.5245 | ambiguous | 0.4125 | ambiguous | -0.379 | Destabilizing | 0.988 | D | 0.572 | neutral | None | None | None | None | I |
A/N | 0.7151 | likely_pathogenic | 0.5989 | pathogenic | -0.267 | Destabilizing | 0.956 | D | 0.633 | neutral | None | None | None | None | I |
A/P | 0.6301 | likely_pathogenic | 0.4931 | ambiguous | -0.292 | Destabilizing | 0.988 | D | 0.579 | neutral | N | 0.475207126 | None | None | I |
A/Q | 0.7583 | likely_pathogenic | 0.6803 | pathogenic | -0.543 | Destabilizing | 0.978 | D | 0.595 | neutral | None | None | None | None | I |
A/R | 0.8196 | likely_pathogenic | 0.7524 | pathogenic | -0.146 | Destabilizing | 0.956 | D | 0.593 | neutral | None | None | None | None | I |
A/S | 0.1928 | likely_benign | 0.1588 | benign | -0.492 | Destabilizing | 0.267 | N | 0.299 | neutral | N | 0.498759677 | None | None | I |
A/T | 0.2615 | likely_benign | 0.1972 | benign | -0.564 | Destabilizing | 0.929 | D | 0.505 | neutral | N | 0.473406246 | None | None | I |
A/V | 0.3009 | likely_benign | 0.3051 | benign | -0.292 | Destabilizing | 0.159 | N | 0.315 | neutral | N | 0.470977164 | None | None | I |
A/W | 0.9514 | likely_pathogenic | 0.9238 | pathogenic | -1.019 | Destabilizing | 0.998 | D | 0.722 | prob.delet. | None | None | None | None | I |
A/Y | 0.8788 | likely_pathogenic | 0.81 | pathogenic | -0.67 | Destabilizing | 0.978 | D | 0.652 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.