Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 21935 | 66028;66029;66030 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
N2AB | 20294 | 61105;61106;61107 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
N2A | 19367 | 58324;58325;58326 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
N2B | 12870 | 38833;38834;38835 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
Novex-1 | 12995 | 39208;39209;39210 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
Novex-2 | 13062 | 39409;39410;39411 | chr2:178583000;178582999;178582998 | chr2:179447727;179447726;179447725 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs1340276785 | -1.356 | 0.863 | N | 0.586 | 0.266 | 0.180583059064 | gnomAD-2.1.1 | 4.14E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.08E-06 | 0 |
T/A | rs1340276785 | -1.356 | 0.863 | N | 0.586 | 0.266 | 0.180583059064 | gnomAD-4.0.0 | 1.65038E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.96648E-06 | 0 | 0 |
T/I | rs571121441 | 0.028 | 0.885 | N | 0.578 | 0.246 | 0.342865806769 | gnomAD-2.1.1 | 8.3E-06 | None | None | None | None | N | None | 0 | 6.1E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
T/I | rs571121441 | 0.028 | 0.885 | N | 0.578 | 0.246 | 0.342865806769 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 1.96644E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/I | rs571121441 | 0.028 | 0.885 | N | 0.578 | 0.246 | 0.342865806769 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
T/I | rs571121441 | 0.028 | 0.885 | N | 0.578 | 0.246 | 0.342865806769 | gnomAD-4.0.0 | 1.13241E-05 | None | None | None | None | N | None | 0 | 2.23675E-04 | None | 0 | 0 | None | 0 | 0 | 2.57269E-06 | 2.31766E-05 | 0 |
T/N | rs571121441 | None | 0.997 | N | 0.593 | 0.311 | 0.353974658523 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 9.43E-05 | 0 | 0 | 0 | 0 |
T/N | rs571121441 | None | 0.997 | N | 0.593 | 0.311 | 0.353974658523 | gnomAD-4.0.0 | 1.25833E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.5749E-05 | 0 | 8.57556E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1186 | likely_benign | 0.1068 | benign | -1.26 | Destabilizing | 0.863 | D | 0.586 | neutral | N | 0.464116039 | None | None | N |
T/C | 0.3669 | ambiguous | 0.3098 | benign | -1.204 | Destabilizing | 0.999 | D | 0.694 | prob.neutral | None | None | None | None | N |
T/D | 0.6277 | likely_pathogenic | 0.5723 | pathogenic | -1.633 | Destabilizing | 0.998 | D | 0.667 | neutral | None | None | None | None | N |
T/E | 0.3767 | ambiguous | 0.3327 | benign | -1.477 | Destabilizing | 0.993 | D | 0.655 | neutral | None | None | None | None | N |
T/F | 0.3348 | likely_benign | 0.2844 | benign | -1.271 | Destabilizing | 0.986 | D | 0.739 | prob.delet. | None | None | None | None | N |
T/G | 0.4031 | ambiguous | 0.3777 | ambiguous | -1.599 | Destabilizing | 0.993 | D | 0.671 | neutral | None | None | None | None | N |
T/H | 0.3091 | likely_benign | 0.2639 | benign | -1.788 | Destabilizing | 0.999 | D | 0.749 | deleterious | None | None | None | None | N |
T/I | 0.1423 | likely_benign | 0.1162 | benign | -0.389 | Destabilizing | 0.885 | D | 0.578 | neutral | N | 0.486534168 | None | None | N |
T/K | 0.3173 | likely_benign | 0.2722 | benign | -0.557 | Destabilizing | 0.993 | D | 0.656 | neutral | None | None | None | None | N |
T/L | 0.136 | likely_benign | 0.1143 | benign | -0.389 | Destabilizing | 0.591 | D | 0.595 | neutral | None | None | None | None | N |
T/M | 0.0942 | likely_benign | 0.0851 | benign | -0.337 | Destabilizing | 0.807 | D | 0.546 | neutral | None | None | None | None | N |
T/N | 0.2243 | likely_benign | 0.2046 | benign | -1.163 | Destabilizing | 0.997 | D | 0.593 | neutral | N | 0.472536284 | None | None | N |
T/P | 0.9043 | likely_pathogenic | 0.8947 | pathogenic | -0.65 | Destabilizing | 0.997 | D | 0.686 | prob.neutral | N | 0.50488368 | None | None | N |
T/Q | 0.2639 | likely_benign | 0.2306 | benign | -1.125 | Destabilizing | 0.993 | D | 0.701 | prob.neutral | None | None | None | None | N |
T/R | 0.2583 | likely_benign | 0.2088 | benign | -0.62 | Destabilizing | 0.993 | D | 0.683 | prob.neutral | None | None | None | None | N |
T/S | 0.1442 | likely_benign | 0.1356 | benign | -1.381 | Destabilizing | 0.969 | D | 0.566 | neutral | N | 0.488803682 | None | None | N |
T/V | 0.1127 | likely_benign | 0.0983 | benign | -0.65 | Destabilizing | 0.214 | N | 0.513 | neutral | None | None | None | None | N |
T/W | 0.7234 | likely_pathogenic | 0.6689 | pathogenic | -1.336 | Destabilizing | 0.999 | D | 0.739 | prob.delet. | None | None | None | None | N |
T/Y | 0.387 | ambiguous | 0.3425 | ambiguous | -0.956 | Destabilizing | 0.993 | D | 0.759 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.