Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22274 | 67045;67046;67047 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
N2AB | 20633 | 62122;62123;62124 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
N2A | 19706 | 59341;59342;59343 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
N2B | 13209 | 39850;39851;39852 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
Novex-1 | 13334 | 40225;40226;40227 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
Novex-2 | 13401 | 40426;40427;40428 | chr2:178580559;178580558;178580557 | chr2:179445286;179445285;179445284 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs770627108 | -0.547 | 1.0 | N | 0.771 | 0.572 | 0.637424115254 | gnomAD-2.1.1 | 8.11E-06 | None | None | None | None | I | None | 0 | 2.92E-05 | None | 0 | 0 | None | 0 | None | 0 | 8.97E-06 | 0 |
R/C | rs770627108 | -0.547 | 1.0 | N | 0.771 | 0.572 | 0.637424115254 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/C | rs770627108 | -0.547 | 1.0 | N | 0.771 | 0.572 | 0.637424115254 | gnomAD-4.0.0 | 2.35703E-05 | None | None | None | None | I | None | 0 | 3.34113E-05 | None | 0 | 2.24075E-05 | None | 0 | 0 | 2.79865E-05 | 1.10057E-05 | 1.60308E-05 |
R/H | None | -0.748 | 1.0 | N | 0.734 | 0.436 | 0.518092603711 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 1.79E-05 | 0 |
R/H | None | -0.748 | 1.0 | N | 0.734 | 0.436 | 0.518092603711 | gnomAD-4.0.0 | 9.58641E-06 | None | None | None | None | I | None | 2.99258E-05 | 2.23964E-05 | None | 0 | 7.59955E-05 | None | 0 | 0 | 7.19907E-06 | 1.16074E-05 | 0 |
R/L | rs772979195 | 0.342 | 1.0 | N | 0.686 | 0.434 | 0.590198699859 | gnomAD-2.1.1 | 1.62E-05 | None | None | None | None | I | None | 1.94376E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.96E-06 | 0 |
R/L | rs772979195 | 0.342 | 1.0 | N | 0.686 | 0.434 | 0.590198699859 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | rs772979195 | 0.342 | 1.0 | N | 0.686 | 0.434 | 0.590198699859 | gnomAD-4.0.0 | 2.48069E-06 | None | None | None | None | I | None | 4.0078E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.48011E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9321 | likely_pathogenic | 0.9567 | pathogenic | 0.044 | Stabilizing | 0.999 | D | 0.686 | prob.neutral | None | None | None | None | I |
R/C | 0.6456 | likely_pathogenic | 0.7566 | pathogenic | -0.213 | Destabilizing | 1.0 | D | 0.771 | deleterious | N | 0.521144506 | None | None | I |
R/D | 0.9726 | likely_pathogenic | 0.9812 | pathogenic | -0.147 | Destabilizing | 1.0 | D | 0.739 | prob.delet. | None | None | None | None | I |
R/E | 0.8593 | likely_pathogenic | 0.9006 | pathogenic | -0.076 | Destabilizing | 0.999 | D | 0.74 | deleterious | None | None | None | None | I |
R/F | 0.9409 | likely_pathogenic | 0.9654 | pathogenic | -0.166 | Destabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | I |
R/G | 0.8905 | likely_pathogenic | 0.929 | pathogenic | -0.148 | Destabilizing | 1.0 | D | 0.686 | prob.neutral | N | 0.501937387 | None | None | I |
R/H | 0.2949 | likely_benign | 0.3737 | ambiguous | -0.647 | Destabilizing | 1.0 | D | 0.734 | prob.delet. | N | 0.494050575 | None | None | I |
R/I | 0.882 | likely_pathogenic | 0.9277 | pathogenic | 0.514 | Stabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | I |
R/K | 0.2375 | likely_benign | 0.2903 | benign | -0.077 | Destabilizing | 0.998 | D | 0.613 | neutral | None | None | None | None | I |
R/L | 0.7664 | likely_pathogenic | 0.8355 | pathogenic | 0.514 | Stabilizing | 1.0 | D | 0.686 | prob.neutral | N | 0.513606992 | None | None | I |
R/M | 0.8144 | likely_pathogenic | 0.8905 | pathogenic | -0.016 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | I |
R/N | 0.9437 | likely_pathogenic | 0.965 | pathogenic | 0.025 | Stabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | I |
R/P | 0.8908 | likely_pathogenic | 0.9243 | pathogenic | 0.378 | Stabilizing | 1.0 | D | 0.727 | prob.delet. | D | 0.535579774 | None | None | I |
R/Q | 0.3342 | likely_benign | 0.4194 | ambiguous | -0.013 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | I |
R/S | 0.956 | likely_pathogenic | 0.9707 | pathogenic | -0.251 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | D | 0.532459324 | None | None | I |
R/T | 0.8743 | likely_pathogenic | 0.9203 | pathogenic | -0.047 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | I |
R/V | 0.8915 | likely_pathogenic | 0.9312 | pathogenic | 0.378 | Stabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | I |
R/W | 0.6247 | likely_pathogenic | 0.7202 | pathogenic | -0.27 | Destabilizing | 1.0 | D | 0.774 | deleterious | None | None | None | None | I |
R/Y | 0.8461 | likely_pathogenic | 0.9023 | pathogenic | 0.144 | Stabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.