Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22298 | 67117;67118;67119 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
N2AB | 20657 | 62194;62195;62196 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
N2A | 19730 | 59413;59414;59415 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
N2B | 13233 | 39922;39923;39924 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
Novex-1 | 13358 | 40297;40298;40299 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
Novex-2 | 13425 | 40498;40499;40500 | chr2:178580487;178580486;178580485 | chr2:179445214;179445213;179445212 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/S | rs72646871 | -0.79 | 0.101 | N | 0.383 | 0.038 | 0.0920862733494 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.665E-04 |
P/S | rs72646871 | -0.79 | 0.101 | N | 0.383 | 0.038 | 0.0920862733494 | gnomAD-4.0.0 | 4.77931E-06 | None | None | None | None | N | None | 0 | 2.28833E-05 | None | 0 | 0 | None | 0 | 0 | 2.86116E-06 | 0 | 3.02939E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.1293 | likely_benign | 0.1171 | benign | -0.474 | Destabilizing | 0.047 | N | 0.324 | neutral | N | 0.397949604 | None | None | N |
P/C | 0.7182 | likely_pathogenic | 0.6634 | pathogenic | -0.753 | Destabilizing | 0.94 | D | 0.427 | neutral | None | None | None | None | N |
P/D | 0.4992 | ambiguous | 0.4201 | ambiguous | -0.255 | Destabilizing | 0.418 | N | 0.436 | neutral | None | None | None | None | N |
P/E | 0.2982 | likely_benign | 0.2623 | benign | -0.352 | Destabilizing | 0.129 | N | 0.381 | neutral | None | None | None | None | N |
P/F | 0.7152 | likely_pathogenic | 0.6599 | pathogenic | -0.613 | Destabilizing | 0.418 | N | 0.531 | neutral | None | None | None | None | N |
P/G | 0.3657 | ambiguous | 0.3361 | benign | -0.612 | Destabilizing | 0.418 | N | 0.428 | neutral | None | None | None | None | N |
P/H | 0.3913 | ambiguous | 0.3286 | benign | -0.115 | Destabilizing | 0.716 | D | 0.427 | neutral | None | None | None | None | N |
P/I | 0.3786 | ambiguous | 0.3505 | ambiguous | -0.253 | Destabilizing | 0.129 | N | 0.4 | neutral | None | None | None | None | N |
P/K | 0.4504 | ambiguous | 0.3882 | ambiguous | -0.508 | Destabilizing | 0.129 | N | 0.387 | neutral | None | None | None | None | N |
P/L | 0.1951 | likely_benign | 0.1709 | benign | -0.253 | Destabilizing | 0.001 | N | 0.191 | neutral | N | 0.41911431 | None | None | N |
P/M | 0.3348 | likely_benign | 0.3129 | benign | -0.463 | Destabilizing | 0.027 | N | 0.295 | neutral | None | None | None | None | N |
P/N | 0.3692 | ambiguous | 0.3264 | benign | -0.306 | Destabilizing | 0.418 | N | 0.493 | neutral | None | None | None | None | N |
P/Q | 0.2275 | likely_benign | 0.2001 | benign | -0.511 | Destabilizing | 0.007 | N | 0.264 | neutral | N | 0.398122962 | None | None | N |
P/R | 0.4031 | ambiguous | 0.341 | ambiguous | -0.012 | Destabilizing | 0.213 | N | 0.514 | neutral | N | 0.441316379 | None | None | N |
P/S | 0.2115 | likely_benign | 0.183 | benign | -0.678 | Destabilizing | 0.101 | N | 0.383 | neutral | N | 0.440969663 | None | None | N |
P/T | 0.1559 | likely_benign | 0.1412 | benign | -0.672 | Destabilizing | 0.183 | N | 0.393 | neutral | N | 0.427925794 | None | None | N |
P/V | 0.2516 | likely_benign | 0.2351 | benign | -0.293 | Destabilizing | None | N | 0.167 | neutral | None | None | None | None | N |
P/W | 0.8243 | likely_pathogenic | 0.7767 | pathogenic | -0.696 | Destabilizing | 0.983 | D | 0.429 | neutral | None | None | None | None | N |
P/Y | 0.6239 | likely_pathogenic | 0.5593 | ambiguous | -0.407 | Destabilizing | 0.836 | D | 0.516 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.