Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 22780 | 68563;68564;68565 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
N2AB | 21139 | 63640;63641;63642 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
N2A | 20212 | 60859;60860;60861 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
N2B | 13715 | 41368;41369;41370 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
Novex-1 | 13840 | 41743;41744;41745 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
Novex-2 | 13907 | 41944;41945;41946 | chr2:178578177;178578176;178578175 | chr2:179442904;179442903;179442902 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs878857012 | -1.947 | None | N | 0.249 | 0.034 | None | gnomAD-2.1.1 | 4.06E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.93E-06 | 0 |
L/V | rs878857012 | -1.947 | None | N | 0.249 | 0.034 | None | gnomAD-4.0.0 | 6.38943E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.58752E-06 | 0 | 3.03067E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.6384 | likely_pathogenic | 0.6562 | pathogenic | -3.283 | Highly Destabilizing | 0.007 | N | 0.541 | neutral | None | None | None | None | N |
L/C | 0.7737 | likely_pathogenic | 0.7418 | pathogenic | -2.395 | Highly Destabilizing | 0.628 | D | 0.73 | prob.delet. | None | None | None | None | N |
L/D | 0.9967 | likely_pathogenic | 0.9975 | pathogenic | -3.841 | Highly Destabilizing | 0.356 | N | 0.754 | deleterious | None | None | None | None | N |
L/E | 0.9794 | likely_pathogenic | 0.9836 | pathogenic | -3.54 | Highly Destabilizing | 0.136 | N | 0.732 | prob.delet. | None | None | None | None | N |
L/F | 0.6512 | likely_pathogenic | 0.6005 | pathogenic | -2.002 | Highly Destabilizing | 0.055 | N | 0.535 | neutral | D | 0.523789581 | None | None | N |
L/G | 0.9515 | likely_pathogenic | 0.9505 | pathogenic | -3.823 | Highly Destabilizing | 0.136 | N | 0.695 | prob.neutral | None | None | None | None | N |
L/H | 0.9754 | likely_pathogenic | 0.9772 | pathogenic | -3.297 | Highly Destabilizing | 0.828 | D | 0.812 | deleterious | D | 0.52404307 | None | None | N |
L/I | 0.0557 | likely_benign | 0.0591 | benign | -1.618 | Destabilizing | None | N | 0.239 | neutral | N | 0.409865683 | None | None | N |
L/K | 0.9795 | likely_pathogenic | 0.9843 | pathogenic | -2.718 | Highly Destabilizing | 0.136 | N | 0.685 | prob.neutral | None | None | None | None | N |
L/M | 0.1819 | likely_benign | 0.1675 | benign | -1.794 | Destabilizing | 0.214 | N | 0.549 | neutral | None | None | None | None | N |
L/N | 0.9729 | likely_pathogenic | 0.9768 | pathogenic | -3.432 | Highly Destabilizing | 0.628 | D | 0.788 | deleterious | None | None | None | None | N |
L/P | 0.9694 | likely_pathogenic | 0.9724 | pathogenic | -2.171 | Highly Destabilizing | 0.56 | D | 0.764 | deleterious | N | 0.50133046 | None | None | N |
L/Q | 0.9505 | likely_pathogenic | 0.9541 | pathogenic | -3.108 | Highly Destabilizing | 0.628 | D | 0.781 | deleterious | None | None | None | None | N |
L/R | 0.963 | likely_pathogenic | 0.9697 | pathogenic | -2.625 | Highly Destabilizing | 0.295 | N | 0.767 | deleterious | D | 0.52404307 | None | None | N |
L/S | 0.9277 | likely_pathogenic | 0.9331 | pathogenic | -3.9 | Highly Destabilizing | 0.136 | N | 0.633 | neutral | None | None | None | None | N |
L/T | 0.6249 | likely_pathogenic | 0.6524 | pathogenic | -3.457 | Highly Destabilizing | 0.031 | N | 0.543 | neutral | None | None | None | None | N |
L/V | 0.0675 | likely_benign | 0.0651 | benign | -2.171 | Highly Destabilizing | None | N | 0.249 | neutral | N | 0.402491419 | None | None | N |
L/W | 0.9623 | likely_pathogenic | 0.9615 | pathogenic | -2.267 | Highly Destabilizing | 0.864 | D | 0.796 | deleterious | None | None | None | None | N |
L/Y | 0.9611 | likely_pathogenic | 0.9585 | pathogenic | -2.247 | Highly Destabilizing | 0.356 | N | 0.655 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.