Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23077 | 69454;69455;69456 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
N2AB | 21436 | 64531;64532;64533 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
N2A | 20509 | 61750;61751;61752 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
N2B | 14012 | 42259;42260;42261 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
Novex-1 | 14137 | 42634;42635;42636 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
Novex-2 | 14204 | 42835;42836;42837 | chr2:178577106;178577105;178577104 | chr2:179441833;179441832;179441831 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs529270980 | -1.827 | 0.988 | N | 0.784 | 0.444 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | N | None | 1.24028E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/F | rs529270980 | -1.827 | 0.988 | N | 0.784 | 0.444 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 9.66E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/F | rs529270980 | -1.827 | 0.988 | N | 0.784 | 0.444 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
L/F | rs529270980 | -1.827 | 0.988 | N | 0.784 | 0.444 | None | gnomAD-4.0.0 | 1.05378E-05 | None | None | None | None | N | None | 1.46729E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 5.08672E-06 | 0 | 0 |
L/I | None | None | 0.067 | N | 0.368 | 0.114 | 0.283371740733 | gnomAD-4.0.0 | 6.84378E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.9963E-07 | 0 | 0 |
L/P | rs772742230 | -2.22 | 0.998 | N | 0.893 | 0.633 | 0.86346069705 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
L/P | rs772742230 | -2.22 | 0.998 | N | 0.893 | 0.633 | 0.86346069705 | gnomAD-4.0.0 | 1.59217E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43308E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8954 | likely_pathogenic | 0.8688 | pathogenic | -2.958 | Highly Destabilizing | 0.968 | D | 0.686 | prob.neutral | None | None | None | None | N |
L/C | 0.8953 | likely_pathogenic | 0.8736 | pathogenic | -2.149 | Highly Destabilizing | 1.0 | D | 0.822 | deleterious | None | None | None | None | N |
L/D | 0.9997 | likely_pathogenic | 0.9996 | pathogenic | -3.735 | Highly Destabilizing | 0.998 | D | 0.881 | deleterious | None | None | None | None | N |
L/E | 0.9974 | likely_pathogenic | 0.9966 | pathogenic | -3.407 | Highly Destabilizing | 0.998 | D | 0.883 | deleterious | None | None | None | None | N |
L/F | 0.7891 | likely_pathogenic | 0.7507 | pathogenic | -1.779 | Destabilizing | 0.988 | D | 0.784 | deleterious | N | 0.506179078 | None | None | N |
L/G | 0.9934 | likely_pathogenic | 0.992 | pathogenic | -3.579 | Highly Destabilizing | 0.995 | D | 0.869 | deleterious | None | None | None | None | N |
L/H | 0.9947 | likely_pathogenic | 0.9935 | pathogenic | -3.196 | Highly Destabilizing | 0.999 | D | 0.874 | deleterious | N | 0.517788873 | None | None | N |
L/I | 0.0975 | likely_benign | 0.0907 | benign | -1.083 | Destabilizing | 0.067 | N | 0.368 | neutral | N | 0.386700821 | None | None | N |
L/K | 0.9964 | likely_pathogenic | 0.9956 | pathogenic | -2.405 | Highly Destabilizing | 0.995 | D | 0.869 | deleterious | None | None | None | None | N |
L/M | 0.3432 | ambiguous | 0.3074 | benign | -1.18 | Destabilizing | 0.991 | D | 0.733 | prob.delet. | None | None | None | None | N |
L/N | 0.9984 | likely_pathogenic | 0.9979 | pathogenic | -3.133 | Highly Destabilizing | 0.998 | D | 0.897 | deleterious | None | None | None | None | N |
L/P | 0.9957 | likely_pathogenic | 0.9955 | pathogenic | -1.7 | Destabilizing | 0.998 | D | 0.893 | deleterious | N | 0.506432568 | None | None | N |
L/Q | 0.9908 | likely_pathogenic | 0.9882 | pathogenic | -2.792 | Highly Destabilizing | 1.0 | D | 0.905 | deleterious | None | None | None | None | N |
L/R | 0.9913 | likely_pathogenic | 0.9897 | pathogenic | -2.375 | Highly Destabilizing | 0.998 | D | 0.886 | deleterious | N | 0.517788873 | None | None | N |
L/S | 0.9919 | likely_pathogenic | 0.9886 | pathogenic | -3.708 | Highly Destabilizing | 0.995 | D | 0.875 | deleterious | None | None | None | None | N |
L/T | 0.9249 | likely_pathogenic | 0.9023 | pathogenic | -3.214 | Highly Destabilizing | 0.991 | D | 0.803 | deleterious | None | None | None | None | N |
L/V | 0.0953 | likely_benign | 0.0893 | benign | -1.7 | Destabilizing | 0.618 | D | 0.632 | neutral | N | 0.36235695 | None | None | N |
L/W | 0.9827 | likely_pathogenic | 0.9796 | pathogenic | -2.206 | Highly Destabilizing | 1.0 | D | 0.823 | deleterious | None | None | None | None | N |
L/Y | 0.9872 | likely_pathogenic | 0.983 | pathogenic | -1.994 | Destabilizing | 0.995 | D | 0.837 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.