Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 23460 | 70603;70604;70605 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
N2AB | 21819 | 65680;65681;65682 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
N2A | 20892 | 62899;62900;62901 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
N2B | 14395 | 43408;43409;43410 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
Novex-1 | 14520 | 43783;43784;43785 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
Novex-2 | 14587 | 43984;43985;43986 | chr2:178575754;178575753;178575752 | chr2:179440481;179440480;179440479 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/R | rs879027466 | None | 0.995 | N | 0.584 | 0.489 | 0.547979623877 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 7.24E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/R | rs879027466 | None | 0.995 | N | 0.584 | 0.489 | 0.547979623877 | gnomAD-4.0.0 | 5.12638E-06 | None | None | None | None | I | None | 6.76888E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1917 | likely_benign | 0.2155 | benign | -0.552 | Destabilizing | 0.971 | D | 0.503 | neutral | None | None | None | None | I |
L/C | 0.5511 | ambiguous | 0.6222 | pathogenic | -0.876 | Destabilizing | 1.0 | D | 0.521 | neutral | None | None | None | None | I |
L/D | 0.6198 | likely_pathogenic | 0.6926 | pathogenic | -0.301 | Destabilizing | 0.999 | D | 0.616 | neutral | None | None | None | None | I |
L/E | 0.2943 | likely_benign | 0.3598 | ambiguous | -0.373 | Destabilizing | 0.998 | D | 0.617 | neutral | None | None | None | None | I |
L/F | 0.1986 | likely_benign | 0.2476 | benign | -0.595 | Destabilizing | 0.99 | D | 0.466 | neutral | None | None | None | None | I |
L/G | 0.5051 | ambiguous | 0.5616 | ambiguous | -0.672 | Destabilizing | 0.999 | D | 0.619 | neutral | None | None | None | None | I |
L/H | 0.2837 | likely_benign | 0.3473 | ambiguous | 0.104 | Stabilizing | 0.999 | D | 0.647 | neutral | None | None | None | None | I |
L/I | 0.0885 | likely_benign | 0.0907 | benign | -0.344 | Destabilizing | 0.006 | N | 0.145 | neutral | None | None | None | None | I |
L/K | 0.2834 | likely_benign | 0.341 | ambiguous | -0.42 | Destabilizing | 0.955 | D | 0.583 | neutral | None | None | None | None | I |
L/M | 0.1083 | likely_benign | 0.1157 | benign | -0.708 | Destabilizing | 0.955 | D | 0.462 | neutral | N | 0.487840425 | None | None | I |
L/N | 0.3321 | likely_benign | 0.3517 | ambiguous | -0.361 | Destabilizing | 0.999 | D | 0.617 | neutral | None | None | None | None | I |
L/P | 0.3502 | ambiguous | 0.4154 | ambiguous | -0.386 | Destabilizing | 0.998 | D | 0.615 | neutral | N | 0.512726265 | None | None | I |
L/Q | 0.1462 | likely_benign | 0.1801 | benign | -0.514 | Destabilizing | 0.996 | D | 0.576 | neutral | D | 0.52221254 | None | None | I |
L/R | 0.2601 | likely_benign | 0.3396 | benign | 0.058 | Stabilizing | 0.995 | D | 0.584 | neutral | N | 0.521345749 | None | None | I |
L/S | 0.2582 | likely_benign | 0.3024 | benign | -0.752 | Destabilizing | 0.996 | D | 0.519 | neutral | None | None | None | None | I |
L/T | 0.2165 | likely_benign | 0.2327 | benign | -0.721 | Destabilizing | 0.909 | D | 0.479 | neutral | None | None | None | None | I |
L/V | 0.0825 | likely_benign | 0.0907 | benign | -0.386 | Destabilizing | 0.013 | N | 0.177 | neutral | N | 0.4843103 | None | None | I |
L/W | 0.4464 | ambiguous | 0.5514 | ambiguous | -0.606 | Destabilizing | 1.0 | D | 0.691 | prob.neutral | None | None | None | None | I |
L/Y | 0.4082 | ambiguous | 0.4723 | ambiguous | -0.39 | Destabilizing | 0.971 | D | 0.469 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.