Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 24440 | 73543;73544;73545 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
N2AB | 22799 | 68620;68621;68622 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
N2A | 21872 | 65839;65840;65841 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
N2B | 15375 | 46348;46349;46350 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
Novex-1 | 15500 | 46723;46724;46725 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
Novex-2 | 15567 | 46924;46925;46926 | chr2:178572814;178572813;178572812 | chr2:179437541;179437540;179437539 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/L | rs373311221 | -1.038 | 0.006 | N | 0.219 | 0.196 | 0.533131753447 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
I/L | rs373311221 | -1.038 | 0.006 | N | 0.219 | 0.196 | 0.533131753447 | gnomAD-4.0.0 | 4.79049E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 6.29733E-06 | 0 | 0 |
I/T | rs370931683 | -2.072 | 0.822 | N | 0.607 | 0.404 | None | gnomAD-2.1.1 | 3.94E-05 | None | None | None | None | I | None | 3.72147E-04 | 0 | None | 0 | 0 | None | 0 | None | 4E-05 | 7.84E-06 | 0 |
I/T | rs370931683 | -2.072 | 0.822 | N | 0.607 | 0.404 | None | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | I | None | 2.89603E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/T | rs370931683 | -2.072 | 0.822 | N | 0.607 | 0.404 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | I | None | 1.5E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
I/T | rs370931683 | -2.072 | 0.822 | N | 0.607 | 0.404 | None | gnomAD-4.0.0 | 1.36355E-05 | None | None | None | None | I | None | 2.53313E-04 | 0 | None | 0 | 0 | None | 1.56216E-05 | 0 | 0 | 0 | 3.20164E-05 |
I/V | rs373311221 | -1.398 | 0.014 | N | 0.227 | 0.094 | 0.520854953866 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 1.11869E-04 | None | 0 | None | 0 | 0 | 0 |
I/V | rs373311221 | -1.398 | 0.014 | N | 0.227 | 0.094 | 0.520854953866 | gnomAD-4.0.0 | 4.10614E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 3.47222E-04 | 3.59847E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.728 | likely_pathogenic | 0.7559 | pathogenic | -2.049 | Highly Destabilizing | 0.754 | D | 0.533 | neutral | None | None | None | None | I |
I/C | 0.8689 | likely_pathogenic | 0.8861 | pathogenic | -1.275 | Destabilizing | 0.998 | D | 0.573 | neutral | None | None | None | None | I |
I/D | 0.9913 | likely_pathogenic | 0.9925 | pathogenic | -1.689 | Destabilizing | 0.993 | D | 0.675 | prob.neutral | None | None | None | None | I |
I/E | 0.969 | likely_pathogenic | 0.9713 | pathogenic | -1.59 | Destabilizing | 0.978 | D | 0.671 | neutral | None | None | None | None | I |
I/F | 0.5738 | likely_pathogenic | 0.6011 | pathogenic | -1.252 | Destabilizing | 0.956 | D | 0.595 | neutral | None | None | None | None | I |
I/G | 0.9587 | likely_pathogenic | 0.9667 | pathogenic | -2.478 | Highly Destabilizing | 0.978 | D | 0.662 | neutral | None | None | None | None | I |
I/H | 0.9641 | likely_pathogenic | 0.9636 | pathogenic | -1.734 | Destabilizing | 0.998 | D | 0.643 | neutral | None | None | None | None | I |
I/K | 0.9438 | likely_pathogenic | 0.9441 | pathogenic | -1.527 | Destabilizing | 0.97 | D | 0.67 | neutral | N | 0.503662588 | None | None | I |
I/L | 0.1193 | likely_benign | 0.1353 | benign | -0.887 | Destabilizing | 0.006 | N | 0.219 | neutral | N | 0.490884848 | None | None | I |
I/M | 0.2008 | likely_benign | 0.2153 | benign | -0.712 | Destabilizing | 0.942 | D | 0.566 | neutral | N | 0.514511915 | None | None | I |
I/N | 0.9097 | likely_pathogenic | 0.9096 | pathogenic | -1.518 | Destabilizing | 0.993 | D | 0.682 | prob.neutral | None | None | None | None | I |
I/P | 0.9871 | likely_pathogenic | 0.9859 | pathogenic | -1.247 | Destabilizing | 0.993 | D | 0.679 | prob.neutral | None | None | None | None | I |
I/Q | 0.9321 | likely_pathogenic | 0.9351 | pathogenic | -1.568 | Destabilizing | 0.993 | D | 0.682 | prob.neutral | None | None | None | None | I |
I/R | 0.9227 | likely_pathogenic | 0.9236 | pathogenic | -1.028 | Destabilizing | 0.97 | D | 0.681 | prob.neutral | N | 0.514765404 | None | None | I |
I/S | 0.8574 | likely_pathogenic | 0.8658 | pathogenic | -2.208 | Highly Destabilizing | 0.978 | D | 0.615 | neutral | None | None | None | None | I |
I/T | 0.7308 | likely_pathogenic | 0.7419 | pathogenic | -1.984 | Destabilizing | 0.822 | D | 0.607 | neutral | N | 0.486999911 | None | None | I |
I/V | 0.0805 | likely_benign | 0.0856 | benign | -1.247 | Destabilizing | 0.014 | N | 0.227 | neutral | N | 0.384770529 | None | None | I |
I/W | 0.9816 | likely_pathogenic | 0.9816 | pathogenic | -1.465 | Destabilizing | 0.998 | D | 0.632 | neutral | None | None | None | None | I |
I/Y | 0.926 | likely_pathogenic | 0.9269 | pathogenic | -1.209 | Destabilizing | 0.978 | D | 0.627 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.