Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 24649 | 74170;74171;74172 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
N2AB | 23008 | 69247;69248;69249 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
N2A | 22081 | 66466;66467;66468 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
N2B | 15584 | 46975;46976;46977 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
Novex-1 | 15709 | 47350;47351;47352 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
Novex-2 | 15776 | 47551;47552;47553 | chr2:178572187;178572186;178572185 | chr2:179436914;179436913;179436912 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | rs1559410802 | None | 0.995 | N | 0.703 | 0.383 | 0.802570031157 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.66223E-04 |
L/P | rs1559410802 | None | 0.995 | N | 0.703 | 0.383 | 0.802570031157 | gnomAD-4.0.0 | 1.36872E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79917E-06 | 0 | 0 |
L/V | None | None | 0.068 | N | 0.477 | 0.042 | 0.423002944196 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1397 | likely_benign | 0.1428 | benign | -1.114 | Destabilizing | 0.833 | D | 0.549 | neutral | None | None | None | None | N |
L/C | 0.487 | ambiguous | 0.4857 | ambiguous | -0.655 | Destabilizing | 0.999 | D | 0.553 | neutral | None | None | None | None | N |
L/D | 0.6631 | likely_pathogenic | 0.6666 | pathogenic | -0.57 | Destabilizing | 0.989 | D | 0.694 | prob.neutral | None | None | None | None | N |
L/E | 0.3864 | ambiguous | 0.3959 | ambiguous | -0.641 | Destabilizing | 0.985 | D | 0.687 | prob.neutral | None | None | None | None | N |
L/F | 0.1564 | likely_benign | 0.1505 | benign | -0.906 | Destabilizing | 0.972 | D | 0.506 | neutral | None | None | None | None | N |
L/G | 0.3758 | ambiguous | 0.3789 | ambiguous | -1.34 | Destabilizing | 0.989 | D | 0.625 | neutral | None | None | None | None | N |
L/H | 0.217 | likely_benign | 0.217 | benign | -0.51 | Destabilizing | 0.998 | D | 0.691 | prob.neutral | None | None | None | None | N |
L/I | 0.0739 | likely_benign | 0.0722 | benign | -0.616 | Destabilizing | 0.004 | N | 0.231 | neutral | N | 0.428881092 | None | None | N |
L/K | 0.2898 | likely_benign | 0.2968 | benign | -0.686 | Destabilizing | 0.556 | D | 0.577 | neutral | None | None | None | None | N |
L/M | 0.0933 | likely_benign | 0.0947 | benign | -0.469 | Destabilizing | 0.912 | D | 0.511 | neutral | None | None | None | None | N |
L/N | 0.2617 | likely_benign | 0.2624 | benign | -0.391 | Destabilizing | 0.989 | D | 0.703 | prob.neutral | None | None | None | None | N |
L/P | 0.7149 | likely_pathogenic | 0.686 | pathogenic | -0.749 | Destabilizing | 0.995 | D | 0.703 | prob.neutral | N | 0.488044689 | None | None | N |
L/Q | 0.1478 | likely_benign | 0.1492 | benign | -0.654 | Destabilizing | 0.988 | D | 0.669 | neutral | N | 0.470380998 | None | None | N |
L/R | 0.2398 | likely_benign | 0.2379 | benign | -0.026 | Destabilizing | 0.963 | D | 0.675 | prob.neutral | N | 0.496412806 | None | None | N |
L/S | 0.1463 | likely_benign | 0.1462 | benign | -0.907 | Destabilizing | 0.859 | D | 0.583 | neutral | None | None | None | None | N |
L/T | 0.0829 | likely_benign | 0.0851 | benign | -0.872 | Destabilizing | 0.02 | N | 0.221 | neutral | None | None | None | None | N |
L/V | 0.0821 | likely_benign | 0.0823 | benign | -0.749 | Destabilizing | 0.068 | N | 0.477 | neutral | N | 0.465281822 | None | None | N |
L/W | 0.363 | ambiguous | 0.3255 | benign | -0.891 | Destabilizing | 0.999 | D | 0.728 | prob.delet. | None | None | None | None | N |
L/Y | 0.4011 | ambiguous | 0.3981 | ambiguous | -0.686 | Destabilizing | 0.925 | D | 0.565 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.