Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25709 | 77350;77351;77352 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
N2AB | 24068 | 72427;72428;72429 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
N2A | 23141 | 69646;69647;69648 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
N2B | 16644 | 50155;50156;50157 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
Novex-1 | 16769 | 50530;50531;50532 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
Novex-2 | 16836 | 50731;50732;50733 | chr2:178569007;178569006;178569005 | chr2:179433734;179433733;179433732 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | rs1707103269 | None | 1.0 | N | 0.735 | 0.556 | 0.467247493403 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 2.88184E-04 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/A | rs1707103269 | None | 1.0 | N | 0.735 | 0.556 | 0.467247493403 | gnomAD-4.0.0 | 6.57549E-06 | None | None | None | None | N | None | 0 | 0 | None | 2.88184E-04 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/H | rs772757849 | -0.418 | 1.0 | N | 0.666 | 0.517 | 0.360565625551 | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.13E-05 | 0 |
D/H | rs772757849 | -0.418 | 1.0 | N | 0.666 | 0.517 | 0.360565625551 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/H | rs772757849 | -0.418 | 1.0 | N | 0.666 | 0.517 | 0.360565625551 | gnomAD-4.0.0 | 8.67806E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.18689E-05 | 0 | 0 |
D/V | rs1707103269 | None | 1.0 | N | 0.773 | 0.645 | 0.690481662768 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/V | rs1707103269 | None | 1.0 | N | 0.773 | 0.645 | 0.690481662768 | gnomAD-4.0.0 | 6.57549E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.47119E-05 | 0 | 0 |
D/Y | rs772757849 | -0.085 | 1.0 | N | 0.698 | 0.526 | 0.723653669168 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.58E-05 | None | 0 | None | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.5426 | ambiguous | 0.476 | ambiguous | -0.484 | Destabilizing | 1.0 | D | 0.735 | prob.delet. | N | 0.479091012 | None | None | N |
D/C | 0.9386 | likely_pathogenic | 0.9176 | pathogenic | 0.065 | Stabilizing | 1.0 | D | 0.693 | prob.neutral | None | None | None | None | N |
D/E | 0.505 | ambiguous | 0.4486 | ambiguous | -0.427 | Destabilizing | 0.994 | D | 0.395 | neutral | N | 0.475285385 | None | None | N |
D/F | 0.9248 | likely_pathogenic | 0.8955 | pathogenic | -0.439 | Destabilizing | 1.0 | D | 0.719 | prob.delet. | None | None | None | None | N |
D/G | 0.5506 | ambiguous | 0.5059 | ambiguous | -0.719 | Destabilizing | 1.0 | D | 0.731 | prob.delet. | N | 0.489815434 | None | None | N |
D/H | 0.741 | likely_pathogenic | 0.6742 | pathogenic | -0.545 | Destabilizing | 1.0 | D | 0.666 | neutral | N | 0.4985913 | None | None | N |
D/I | 0.8492 | likely_pathogenic | 0.7961 | pathogenic | 0.1 | Stabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | N |
D/K | 0.8485 | likely_pathogenic | 0.8053 | pathogenic | 0.236 | Stabilizing | 1.0 | D | 0.771 | deleterious | None | None | None | None | N |
D/L | 0.8242 | likely_pathogenic | 0.7874 | pathogenic | 0.1 | Stabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
D/M | 0.911 | likely_pathogenic | 0.8908 | pathogenic | 0.443 | Stabilizing | 1.0 | D | 0.692 | prob.neutral | None | None | None | None | N |
D/N | 0.2339 | likely_benign | 0.1928 | benign | -0.119 | Destabilizing | 1.0 | D | 0.653 | neutral | D | 0.522847258 | None | None | N |
D/P | 0.9948 | likely_pathogenic | 0.9916 | pathogenic | -0.072 | Destabilizing | 0.998 | D | 0.76 | deleterious | None | None | None | None | N |
D/Q | 0.792 | likely_pathogenic | 0.7507 | pathogenic | -0.078 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | None | None | None | None | N |
D/R | 0.84 | likely_pathogenic | 0.7958 | pathogenic | 0.284 | Stabilizing | 1.0 | D | 0.73 | prob.delet. | None | None | None | None | N |
D/S | 0.3764 | ambiguous | 0.3157 | benign | -0.246 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | N |
D/T | 0.6233 | likely_pathogenic | 0.5612 | ambiguous | -0.056 | Destabilizing | 1.0 | D | 0.777 | deleterious | None | None | None | None | N |
D/V | 0.6917 | likely_pathogenic | 0.6117 | pathogenic | -0.072 | Destabilizing | 1.0 | D | 0.773 | deleterious | N | 0.500944704 | None | None | N |
D/W | 0.9878 | likely_pathogenic | 0.9829 | pathogenic | -0.283 | Destabilizing | 1.0 | D | 0.687 | prob.neutral | None | None | None | None | N |
D/Y | 0.7033 | likely_pathogenic | 0.6163 | pathogenic | -0.192 | Destabilizing | 1.0 | D | 0.698 | prob.neutral | N | 0.509947606 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.