Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 25768 | 77527;77528;77529 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
N2AB | 24127 | 72604;72605;72606 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
N2A | 23200 | 69823;69824;69825 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
N2B | 16703 | 50332;50333;50334 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
Novex-1 | 16828 | 50707;50708;50709 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
Novex-2 | 16895 | 50908;50909;50910 | chr2:178568830;178568829;178568828 | chr2:179433557;179433556;179433555 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/I | rs541266544 | -0.658 | 0.134 | N | 0.505 | 0.123 | 0.438170831126 | gnomAD-2.1.1 | 1.10953E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.15E-05 | None | 9.48394E-04 | None | 0 | 0 | 1.40805E-04 |
L/I | rs541266544 | -0.658 | 0.134 | N | 0.505 | 0.123 | 0.438170831126 | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 1.657E-03 | 0 |
L/I | rs541266544 | -0.658 | 0.134 | N | 0.505 | 0.123 | 0.438170831126 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 2E-03 | None |
L/I | rs541266544 | -0.658 | 0.134 | N | 0.505 | 0.123 | 0.438170831126 | gnomAD-4.0.0 | 6.13697E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.03238E-03 | 8.00615E-05 |
L/P | rs572569285 | -1.497 | 0.996 | N | 0.623 | 0.338 | 0.785001498622 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
L/P | rs572569285 | -1.497 | 0.996 | N | 0.623 | 0.338 | 0.785001498622 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07297E-04 | 0 |
L/P | rs572569285 | -1.497 | 0.996 | N | 0.623 | 0.338 | 0.785001498622 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
L/P | rs572569285 | -1.497 | 0.996 | N | 0.623 | 0.338 | 0.785001498622 | gnomAD-4.0.0 | 2.56364E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.68147E-05 | 0 |
L/V | rs541266544 | None | 0.704 | N | 0.612 | 0.182 | 0.441844919209 | gnomAD-4.0.0 | 2.73782E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52309E-05 | None | 0 | 0 | 0 | 0 | 4.9715E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.155 | likely_benign | 0.1415 | benign | -2.268 | Highly Destabilizing | 0.863 | D | 0.56 | neutral | None | None | None | None | N |
L/C | 0.3453 | ambiguous | 0.3367 | benign | -1.215 | Destabilizing | 0.999 | D | 0.562 | neutral | None | None | None | None | N |
L/D | 0.5127 | ambiguous | 0.4994 | ambiguous | -2.757 | Highly Destabilizing | 0.982 | D | 0.61 | neutral | None | None | None | None | N |
L/E | 0.2713 | likely_benign | 0.2637 | benign | -2.488 | Highly Destabilizing | 0.884 | D | 0.57 | neutral | None | None | None | None | N |
L/F | 0.1074 | likely_benign | 0.1031 | benign | -1.29 | Destabilizing | 0.988 | D | 0.55 | neutral | N | 0.410063257 | None | None | N |
L/G | 0.408 | ambiguous | 0.3816 | ambiguous | -2.819 | Highly Destabilizing | 0.969 | D | 0.604 | neutral | None | None | None | None | N |
L/H | 0.1323 | likely_benign | 0.1337 | benign | -2.477 | Highly Destabilizing | 0.077 | N | 0.584 | neutral | N | 0.453083316 | None | None | N |
L/I | 0.0802 | likely_benign | 0.0782 | benign | -0.648 | Destabilizing | 0.134 | N | 0.505 | neutral | N | 0.414565 | None | None | N |
L/K | 0.2424 | likely_benign | 0.2381 | benign | -1.567 | Destabilizing | 0.884 | D | 0.545 | neutral | None | None | None | None | N |
L/M | 0.0866 | likely_benign | 0.0824 | benign | -0.608 | Destabilizing | 0.991 | D | 0.575 | neutral | None | None | None | None | N |
L/N | 0.2041 | likely_benign | 0.1958 | benign | -2.042 | Highly Destabilizing | 0.982 | D | 0.611 | neutral | None | None | None | None | N |
L/P | 0.9192 | likely_pathogenic | 0.9067 | pathogenic | -1.173 | Destabilizing | 0.996 | D | 0.623 | neutral | N | 0.469634038 | None | None | N |
L/Q | 0.0999 | likely_benign | 0.102 | benign | -1.808 | Destabilizing | 0.373 | N | 0.517 | neutral | None | None | None | None | N |
L/R | 0.1736 | likely_benign | 0.1752 | benign | -1.503 | Destabilizing | 0.976 | D | 0.589 | neutral | N | 0.417469232 | None | None | N |
L/S | 0.1284 | likely_benign | 0.1252 | benign | -2.631 | Highly Destabilizing | 0.939 | D | 0.545 | neutral | None | None | None | None | N |
L/T | 0.1156 | likely_benign | 0.1073 | benign | -2.223 | Highly Destabilizing | 0.969 | D | 0.509 | neutral | None | None | None | None | N |
L/V | 0.0773 | likely_benign | 0.074 | benign | -1.173 | Destabilizing | 0.704 | D | 0.612 | neutral | N | 0.405982802 | None | None | N |
L/W | 0.2158 | likely_benign | 0.2125 | benign | -1.774 | Destabilizing | 0.999 | D | 0.651 | neutral | None | None | None | None | N |
L/Y | 0.2271 | likely_benign | 0.2217 | benign | -1.434 | Destabilizing | 0.982 | D | 0.548 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.