Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2603 | 8032;8033;8034 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
N2AB | 2603 | 8032;8033;8034 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
N2A | 2603 | 8032;8033;8034 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
N2B | 2557 | 7894;7895;7896 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
Novex-1 | 2557 | 7894;7895;7896 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
Novex-2 | 2557 | 7894;7895;7896 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
Novex-3 | 2603 | 8032;8033;8034 | chr2:178773157;178773156;178773155 | chr2:179637884;179637883;179637882 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs775528928 | -1.499 | None | N | 0.269 | 0.082 | 0.218112801441 | gnomAD-2.1.1 | 3.99E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.83E-06 | 0 |
T/A | rs775528928 | -1.499 | None | N | 0.269 | 0.082 | 0.218112801441 | gnomAD-4.0.0 | 1.0263E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.34905E-05 | 0 | 0 |
T/I | None | None | None | N | 0.477 | 0.14 | 0.289098819767 | gnomAD-4.0.0 | 1.59113E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43316E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0936 | likely_benign | 0.103 | benign | -1.494 | Destabilizing | None | N | 0.269 | neutral | N | 0.464095187 | None | None | N |
T/C | 0.3102 | likely_benign | 0.3372 | benign | -1.286 | Destabilizing | 0.356 | N | 0.728 | prob.delet. | None | None | None | None | N |
T/D | 0.3662 | ambiguous | 0.3988 | ambiguous | -2.048 | Highly Destabilizing | 0.072 | N | 0.781 | deleterious | None | None | None | None | N |
T/E | 0.2907 | likely_benign | 0.3155 | benign | -1.813 | Destabilizing | 0.072 | N | 0.76 | deleterious | None | None | None | None | N |
T/F | 0.258 | likely_benign | 0.2794 | benign | -1.083 | Destabilizing | 0.214 | N | 0.742 | deleterious | None | None | None | None | N |
T/G | 0.3189 | likely_benign | 0.3433 | ambiguous | -1.908 | Destabilizing | 0.038 | N | 0.739 | prob.delet. | None | None | None | None | N |
T/H | 0.2383 | likely_benign | 0.2551 | benign | -1.834 | Destabilizing | 0.864 | D | 0.708 | prob.delet. | None | None | None | None | N |
T/I | 0.1193 | likely_benign | 0.1278 | benign | -0.39 | Destabilizing | None | N | 0.477 | neutral | N | 0.477274633 | None | None | N |
T/K | 0.2133 | likely_benign | 0.2286 | benign | -0.697 | Destabilizing | 0.055 | N | 0.76 | deleterious | N | 0.462680123 | None | None | N |
T/L | 0.1064 | likely_benign | 0.1158 | benign | -0.39 | Destabilizing | 0.002 | N | 0.578 | neutral | None | None | None | None | N |
T/M | 0.1037 | likely_benign | 0.1124 | benign | -0.486 | Destabilizing | 0.003 | N | 0.557 | neutral | None | None | None | None | N |
T/N | 0.1256 | likely_benign | 0.1322 | benign | -1.54 | Destabilizing | 0.356 | N | 0.712 | prob.delet. | None | None | None | None | N |
T/P | 0.742 | likely_pathogenic | 0.7316 | pathogenic | -0.73 | Destabilizing | 0.171 | N | 0.778 | deleterious | D | 0.562109385 | None | None | N |
T/Q | 0.2353 | likely_benign | 0.2602 | benign | -1.283 | Destabilizing | 0.356 | N | 0.755 | deleterious | None | None | None | None | N |
T/R | 0.1603 | likely_benign | 0.1722 | benign | -0.897 | Destabilizing | 0.171 | N | 0.775 | deleterious | N | 0.454928432 | None | None | N |
T/S | 0.1086 | likely_benign | 0.1179 | benign | -1.757 | Destabilizing | 0.012 | N | 0.591 | neutral | N | 0.449652625 | None | None | N |
T/V | 0.1057 | likely_benign | 0.1148 | benign | -0.73 | Destabilizing | None | N | 0.29 | neutral | None | None | None | None | N |
T/W | 0.5991 | likely_pathogenic | 0.625 | pathogenic | -1.226 | Destabilizing | 0.864 | D | 0.725 | prob.delet. | None | None | None | None | N |
T/Y | 0.2597 | likely_benign | 0.2753 | benign | -0.862 | Destabilizing | 0.356 | N | 0.73 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.