Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 26806 | 80641;80642;80643 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
N2AB | 25165 | 75718;75719;75720 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
N2A | 24238 | 72937;72938;72939 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
N2B | 17741 | 53446;53447;53448 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
Novex-1 | 17866 | 53821;53822;53823 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
Novex-2 | 17933 | 54022;54023;54024 | chr2:178565716;178565715;178565714 | chr2:179430443;179430442;179430441 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/R | rs181766682 | -0.045 | 0.004 | N | 0.223 | 0.139 | None | gnomAD-2.1.1 | 5.36E-05 | None | None | None | None | N | None | 6.2004E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
H/R | rs181766682 | -0.045 | 0.004 | N | 0.223 | 0.139 | None | gnomAD-3.1.2 | 1.57768E-04 | None | None | None | None | N | None | 5.54912E-04 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
H/R | rs181766682 | -0.045 | 0.004 | N | 0.223 | 0.139 | None | 1000 genomes | 7.98722E-04 | None | None | None | None | N | None | 3E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
H/R | rs181766682 | -0.045 | 0.004 | N | 0.223 | 0.139 | None | gnomAD-4.0.0 | 3.78027E-05 | None | None | None | None | N | None | 7.46468E-04 | 3.33389E-05 | None | 0 | 0 | None | 0 | 0 | 8.47711E-07 | 1.09791E-05 | 1.60113E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.6125 | likely_pathogenic | 0.5956 | pathogenic | 0.497 | Stabilizing | 0.682 | D | 0.381 | neutral | None | None | None | None | N |
H/C | 0.3431 | ambiguous | 0.3715 | ambiguous | 0.786 | Stabilizing | 0.991 | D | 0.385 | neutral | None | None | None | None | N |
H/D | 0.5154 | ambiguous | 0.424 | ambiguous | 0.124 | Stabilizing | 0.493 | N | 0.355 | neutral | N | 0.433665262 | None | None | N |
H/E | 0.6514 | likely_pathogenic | 0.5936 | pathogenic | 0.114 | Stabilizing | 0.64 | D | 0.319 | neutral | None | None | None | None | N |
H/F | 0.3327 | likely_benign | 0.3433 | ambiguous | 0.799 | Stabilizing | 0.807 | D | 0.335 | neutral | None | None | None | None | N |
H/G | 0.5873 | likely_pathogenic | 0.5502 | ambiguous | 0.279 | Stabilizing | 0.811 | D | 0.391 | neutral | None | None | None | None | N |
H/I | 0.5813 | likely_pathogenic | 0.5329 | ambiguous | 1.021 | Stabilizing | 0.924 | D | 0.406 | neutral | None | None | None | None | N |
H/K | 0.5863 | likely_pathogenic | 0.5266 | ambiguous | 0.476 | Stabilizing | 0.461 | N | 0.37 | neutral | None | None | None | None | N |
H/L | 0.3427 | ambiguous | 0.2963 | benign | 1.021 | Stabilizing | 0.563 | D | 0.415 | neutral | N | 0.515801069 | None | None | N |
H/M | 0.6493 | likely_pathogenic | 0.6256 | pathogenic | 0.838 | Stabilizing | 0.993 | D | 0.343 | neutral | None | None | None | None | N |
H/N | 0.1962 | likely_benign | 0.1578 | benign | 0.545 | Stabilizing | 0.493 | N | 0.374 | neutral | N | 0.464622887 | None | None | N |
H/P | 0.8551 | likely_pathogenic | 0.8555 | pathogenic | 0.872 | Stabilizing | 0.003 | N | 0.269 | neutral | N | 0.504720071 | None | None | N |
H/Q | 0.4326 | ambiguous | 0.3812 | ambiguous | 0.558 | Stabilizing | 0.825 | D | 0.303 | neutral | N | 0.486344954 | None | None | N |
H/R | 0.3156 | likely_benign | 0.2747 | benign | 0.045 | Stabilizing | 0.004 | N | 0.223 | neutral | N | 0.476013317 | None | None | N |
H/S | 0.4269 | ambiguous | 0.398 | ambiguous | 0.604 | Stabilizing | 0.811 | D | 0.348 | neutral | None | None | None | None | N |
H/T | 0.5046 | ambiguous | 0.452 | ambiguous | 0.682 | Stabilizing | 0.563 | D | 0.385 | neutral | None | None | None | None | N |
H/V | 0.5227 | ambiguous | 0.4959 | ambiguous | 0.872 | Stabilizing | 0.64 | D | 0.411 | neutral | None | None | None | None | N |
H/W | 0.474 | ambiguous | 0.5072 | ambiguous | 0.664 | Stabilizing | 0.998 | D | 0.351 | neutral | None | None | None | None | N |
H/Y | 0.1357 | likely_benign | 0.1343 | benign | 1.042 | Stabilizing | 0.024 | N | 0.228 | neutral | N | 0.409020321 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.