Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28200 | 84823;84824;84825 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
N2AB | 26559 | 79900;79901;79902 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
N2A | 25632 | 77119;77120;77121 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
N2B | 19135 | 57628;57629;57630 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
Novex-1 | 19260 | 58003;58004;58005 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
Novex-2 | 19327 | 58204;58205;58206 | chr2:178561534;178561533;178561532 | chr2:179426261;179426260;179426259 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs769081825 | -0.52 | 0.998 | N | 0.614 | 0.324 | 0.558227216974 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
L/F | rs769081825 | -0.52 | 0.998 | N | 0.614 | 0.324 | 0.558227216974 | gnomAD-4.0.0 | 6.84426E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99671E-07 | 0 | 0 |
L/V | None | None | 0.979 | N | 0.569 | 0.255 | 0.501308276186 | gnomAD-4.0.0 | 6.84426E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99671E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7466 | likely_pathogenic | 0.7214 | pathogenic | -0.618 | Destabilizing | 0.968 | D | 0.568 | neutral | None | None | None | None | I |
L/C | 0.8483 | likely_pathogenic | 0.8408 | pathogenic | -0.763 | Destabilizing | 1.0 | D | 0.643 | neutral | None | None | None | None | I |
L/D | 0.9784 | likely_pathogenic | 0.9763 | pathogenic | -0.097 | Destabilizing | 0.995 | D | 0.725 | prob.delet. | None | None | None | None | I |
L/E | 0.8966 | likely_pathogenic | 0.8845 | pathogenic | -0.162 | Destabilizing | 0.991 | D | 0.713 | prob.delet. | None | None | None | None | I |
L/F | 0.4186 | ambiguous | 0.3908 | ambiguous | -0.568 | Destabilizing | 0.998 | D | 0.614 | neutral | N | 0.48487791 | None | None | I |
L/G | 0.9197 | likely_pathogenic | 0.9093 | pathogenic | -0.771 | Destabilizing | 0.991 | D | 0.712 | prob.delet. | None | None | None | None | I |
L/H | 0.6504 | likely_pathogenic | 0.6239 | pathogenic | 0.079 | Stabilizing | 0.998 | D | 0.717 | prob.delet. | N | 0.466013187 | None | None | I |
L/I | 0.1847 | likely_benign | 0.1792 | benign | -0.323 | Destabilizing | 0.979 | D | 0.543 | neutral | N | 0.473103531 | None | None | I |
L/K | 0.7432 | likely_pathogenic | 0.7162 | pathogenic | -0.348 | Destabilizing | 0.982 | D | 0.586 | neutral | None | None | None | None | I |
L/M | 0.2438 | likely_benign | 0.224 | benign | -0.607 | Destabilizing | 0.998 | D | 0.592 | neutral | None | None | None | None | I |
L/N | 0.8481 | likely_pathogenic | 0.8273 | pathogenic | -0.254 | Destabilizing | 0.991 | D | 0.722 | prob.delet. | None | None | None | None | I |
L/P | 0.9433 | likely_pathogenic | 0.9418 | pathogenic | -0.392 | Destabilizing | 0.998 | D | 0.725 | prob.delet. | N | 0.474647241 | None | None | I |
L/Q | 0.5323 | ambiguous | 0.4855 | ambiguous | -0.406 | Destabilizing | 0.991 | D | 0.678 | prob.neutral | None | None | None | None | I |
L/R | 0.5604 | ambiguous | 0.541 | ambiguous | 0.148 | Stabilizing | 0.142 | N | 0.527 | neutral | N | 0.485771737 | None | None | I |
L/S | 0.8081 | likely_pathogenic | 0.7848 | pathogenic | -0.712 | Destabilizing | 0.991 | D | 0.667 | neutral | None | None | None | None | I |
L/T | 0.6845 | likely_pathogenic | 0.6667 | pathogenic | -0.666 | Destabilizing | 0.991 | D | 0.619 | neutral | None | None | None | None | I |
L/V | 0.2427 | likely_benign | 0.2298 | benign | -0.392 | Destabilizing | 0.979 | D | 0.569 | neutral | N | 0.513131697 | None | None | I |
L/W | 0.6804 | likely_pathogenic | 0.6744 | pathogenic | -0.578 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | I |
L/Y | 0.726 | likely_pathogenic | 0.7103 | pathogenic | -0.351 | Destabilizing | 0.998 | D | 0.635 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.