Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28298 | 85117;85118;85119 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
N2AB | 26657 | 80194;80195;80196 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
N2A | 25730 | 77413;77414;77415 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
N2B | 19233 | 57922;57923;57924 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
Novex-1 | 19358 | 58297;58298;58299 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
Novex-2 | 19425 | 58498;58499;58500 | chr2:178561240;178561239;178561238 | chr2:179425967;179425966;179425965 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/L | rs187270666 | None | 0.987 | N | 0.459 | 0.438 | 0.472504041403 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/L | rs187270666 | None | 0.987 | N | 0.459 | 0.438 | 0.472504041403 | gnomAD-4.0.0 | 1.23952E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.69519E-06 | 0 | 0 |
R/Q | None | 0.166 | 0.959 | N | 0.48 | 0.218 | None | gnomAD-2.1.1 | 1.44735E-03 | None | None | None | None | N | None | 8.27E-05 | 0 | None | 0 | 1.54321E-04 | None | 1.30727E-04 | None | 1.19907E-02 | 6.56897E-04 | 1.82584E-03 |
R/Q | None | 0.166 | 0.959 | N | 0.48 | 0.218 | None | gnomAD-3.1.2 | 1.1505E-03 | None | None | None | None | N | None | 7.24E-05 | 6.55E-05 | 0 | 0 | 1.93349E-04 | None | 1.33786E-02 | 0 | 3.82297E-04 | 4.14079E-04 | 0 |
R/Q | None | 0.166 | 0.959 | N | 0.48 | 0.218 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 2E-03 | None | None | None | 1E-03 | None |
R/Q | None | 0.166 | 0.959 | N | 0.48 | 0.218 | None | gnomAD-4.0.0 | 6.59377E-04 | None | None | None | None | N | None | 5.33134E-05 | 1.66661E-05 | None | 0 | 2.00902E-04 | None | 1.1973E-02 | 0 | 1.93253E-04 | 8.78349E-05 | 7.84326E-04 |
R/W | rs779581886 | -0.405 | 1.0 | N | 0.672 | 0.428 | None | gnomAD-2.1.1 | 2.01E-05 | None | None | None | None | N | None | 1.29182E-04 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 4.65E-05 | 8.89E-06 | 0 |
R/W | rs779581886 | -0.405 | 1.0 | N | 0.672 | 0.428 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/W | rs779581886 | -0.405 | 1.0 | N | 0.672 | 0.428 | None | gnomAD-4.0.0 | 9.9164E-06 | None | None | None | None | N | None | 5.3416E-05 | 0 | None | 0 | 2.23135E-05 | None | 1.56495E-05 | 0 | 6.78079E-06 | 2.19616E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8674 | likely_pathogenic | 0.854 | pathogenic | 0.06 | Stabilizing | 0.916 | D | 0.517 | neutral | None | None | None | None | N |
R/C | 0.4752 | ambiguous | 0.4517 | ambiguous | -0.33 | Destabilizing | 0.999 | D | 0.653 | neutral | None | None | None | None | N |
R/D | 0.9348 | likely_pathogenic | 0.926 | pathogenic | -0.297 | Destabilizing | 0.845 | D | 0.45 | neutral | None | None | None | None | N |
R/E | 0.7821 | likely_pathogenic | 0.7503 | pathogenic | -0.247 | Destabilizing | 0.033 | N | 0.413 | neutral | None | None | None | None | N |
R/F | 0.8546 | likely_pathogenic | 0.8548 | pathogenic | -0.264 | Destabilizing | 0.996 | D | 0.613 | neutral | None | None | None | None | N |
R/G | 0.7782 | likely_pathogenic | 0.763 | pathogenic | -0.086 | Destabilizing | 0.954 | D | 0.443 | neutral | N | 0.511302113 | None | None | N |
R/H | 0.2184 | likely_benign | 0.2049 | benign | -0.59 | Destabilizing | 0.987 | D | 0.526 | neutral | None | None | None | None | N |
R/I | 0.6681 | likely_pathogenic | 0.6308 | pathogenic | 0.401 | Stabilizing | 0.987 | D | 0.627 | neutral | None | None | None | None | N |
R/K | 0.2389 | likely_benign | 0.2161 | benign | -0.181 | Destabilizing | 0.693 | D | 0.545 | neutral | None | None | None | None | N |
R/L | 0.6168 | likely_pathogenic | 0.5909 | pathogenic | 0.401 | Stabilizing | 0.987 | D | 0.459 | neutral | N | 0.465012455 | None | None | N |
R/M | 0.7303 | likely_pathogenic | 0.7109 | pathogenic | -0.116 | Destabilizing | 0.999 | D | 0.511 | neutral | None | None | None | None | N |
R/N | 0.8727 | likely_pathogenic | 0.8647 | pathogenic | -0.179 | Destabilizing | 0.975 | D | 0.479 | neutral | None | None | None | None | N |
R/P | 0.8814 | likely_pathogenic | 0.8673 | pathogenic | 0.306 | Stabilizing | 0.993 | D | 0.555 | neutral | N | 0.479179918 | None | None | N |
R/Q | 0.2465 | likely_benign | 0.2222 | benign | -0.179 | Destabilizing | 0.959 | D | 0.48 | neutral | N | 0.517382724 | None | None | N |
R/S | 0.8958 | likely_pathogenic | 0.889 | pathogenic | -0.344 | Destabilizing | 0.916 | D | 0.473 | neutral | None | None | None | None | N |
R/T | 0.7688 | likely_pathogenic | 0.7401 | pathogenic | -0.18 | Destabilizing | 0.975 | D | 0.462 | neutral | None | None | None | None | N |
R/V | 0.7711 | likely_pathogenic | 0.7416 | pathogenic | 0.306 | Stabilizing | 0.987 | D | 0.625 | neutral | None | None | None | None | N |
R/W | 0.4434 | ambiguous | 0.4385 | ambiguous | -0.461 | Destabilizing | 1.0 | D | 0.672 | neutral | N | 0.512034293 | None | None | N |
R/Y | 0.6782 | likely_pathogenic | 0.6741 | pathogenic | -0.043 | Destabilizing | 0.996 | D | 0.558 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.