Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29345 | 88258;88259;88260 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
N2AB | 27704 | 83335;83336;83337 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
N2A | 26777 | 80554;80555;80556 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
N2B | 20280 | 61063;61064;61065 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
Novex-1 | 20405 | 61438;61439;61440 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
Novex-2 | 20472 | 61639;61640;61641 | chr2:178557121;178557120;178557119 | chr2:179421848;179421847;179421846 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs878854427 | None | 0.454 | N | 0.348 | 0.176 | 0.214338557667 | gnomAD-4.0.0 | 1.0949E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.4392E-05 | 0 | 0 |
T/I | rs1701792162 | None | 0.051 | N | 0.25 | 0.146 | 0.302793454619 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/I | rs1701792162 | None | 0.051 | N | 0.25 | 0.146 | 0.302793454619 | gnomAD-4.0.0 | 6.5697E-06 | None | None | None | None | N | None | 2.41196E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1069 | likely_benign | 0.0964 | benign | -0.62 | Destabilizing | 0.454 | N | 0.348 | neutral | N | 0.503456208 | None | None | N |
T/C | 0.4078 | ambiguous | 0.385 | ambiguous | -0.395 | Destabilizing | 0.998 | D | 0.399 | neutral | None | None | None | None | N |
T/D | 0.4817 | ambiguous | 0.4069 | ambiguous | 0.268 | Stabilizing | 0.842 | D | 0.392 | neutral | None | None | None | None | N |
T/E | 0.3828 | ambiguous | 0.327 | benign | 0.214 | Stabilizing | 0.842 | D | 0.404 | neutral | None | None | None | None | N |
T/F | 0.3373 | likely_benign | 0.266 | benign | -0.99 | Destabilizing | 0.949 | D | 0.511 | neutral | None | None | None | None | N |
T/G | 0.2653 | likely_benign | 0.2377 | benign | -0.788 | Destabilizing | 0.728 | D | 0.458 | neutral | None | None | None | None | N |
T/H | 0.334 | likely_benign | 0.2827 | benign | -1.073 | Destabilizing | 0.998 | D | 0.457 | neutral | None | None | None | None | N |
T/I | 0.1782 | likely_benign | 0.1536 | benign | -0.288 | Destabilizing | 0.051 | N | 0.25 | neutral | N | 0.46351374 | None | None | N |
T/K | 0.2385 | likely_benign | 0.2096 | benign | -0.433 | Destabilizing | 0.842 | D | 0.404 | neutral | None | None | None | None | N |
T/L | 0.1149 | likely_benign | 0.1071 | benign | -0.288 | Destabilizing | 0.016 | N | 0.207 | neutral | None | None | None | None | N |
T/M | 0.1008 | likely_benign | 0.0973 | benign | -0.041 | Destabilizing | 0.949 | D | 0.418 | neutral | None | None | None | None | N |
T/N | 0.1727 | likely_benign | 0.1508 | benign | -0.271 | Destabilizing | 0.801 | D | 0.379 | neutral | N | 0.484450291 | None | None | N |
T/P | 0.3558 | ambiguous | 0.3184 | benign | -0.368 | Destabilizing | 0.966 | D | 0.43 | neutral | N | 0.496731649 | None | None | N |
T/Q | 0.2811 | likely_benign | 0.2512 | benign | -0.495 | Destabilizing | 0.974 | D | 0.436 | neutral | None | None | None | None | N |
T/R | 0.1975 | likely_benign | 0.1675 | benign | -0.174 | Destabilizing | 0.949 | D | 0.437 | neutral | None | None | None | None | N |
T/S | 0.1341 | likely_benign | 0.1199 | benign | -0.563 | Destabilizing | 0.022 | N | 0.125 | neutral | N | 0.476189462 | None | None | N |
T/V | 0.143 | likely_benign | 0.1283 | benign | -0.368 | Destabilizing | 0.525 | D | 0.39 | neutral | None | None | None | None | N |
T/W | 0.6516 | likely_pathogenic | 0.5745 | pathogenic | -0.921 | Destabilizing | 0.998 | D | 0.527 | neutral | None | None | None | None | N |
T/Y | 0.3683 | ambiguous | 0.3066 | benign | -0.667 | Destabilizing | 0.991 | D | 0.505 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.