Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 30004 | 90235;90236;90237 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
N2AB | 28363 | 85312;85313;85314 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
N2A | 27436 | 82531;82532;82533 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
N2B | 20939 | 63040;63041;63042 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
Novex-1 | 21064 | 63415;63416;63417 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
Novex-2 | 21131 | 63616;63617;63618 | chr2:178552890;178552889;178552888 | chr2:179417617;179417616;179417615 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/V | rs1238583004 | -2.113 | 1.0 | N | 0.72 | 0.472 | 0.781133240969 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
F/V | rs1238583004 | -2.113 | 1.0 | N | 0.72 | 0.472 | 0.781133240969 | gnomAD-4.0.0 | 1.59126E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.77577E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/A | 0.8942 | likely_pathogenic | 0.8092 | pathogenic | -2.691 | Highly Destabilizing | 1.0 | D | 0.724 | prob.delet. | None | None | None | None | N |
F/C | 0.4842 | ambiguous | 0.3716 | ambiguous | -1.077 | Destabilizing | 1.0 | D | 0.779 | deleterious | N | 0.473631946 | None | None | N |
F/D | 0.9778 | likely_pathogenic | 0.9596 | pathogenic | -3.029 | Highly Destabilizing | 1.0 | D | 0.834 | deleterious | None | None | None | None | N |
F/E | 0.9811 | likely_pathogenic | 0.9667 | pathogenic | -2.842 | Highly Destabilizing | 1.0 | D | 0.83 | deleterious | None | None | None | None | N |
F/G | 0.956 | likely_pathogenic | 0.9196 | pathogenic | -3.074 | Highly Destabilizing | 1.0 | D | 0.803 | deleterious | None | None | None | None | N |
F/H | 0.6993 | likely_pathogenic | 0.6114 | pathogenic | -1.708 | Destabilizing | 1.0 | D | 0.788 | deleterious | None | None | None | None | N |
F/I | 0.543 | ambiguous | 0.3909 | ambiguous | -1.433 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | N | 0.485867738 | None | None | N |
F/K | 0.9709 | likely_pathogenic | 0.9504 | pathogenic | -1.528 | Destabilizing | 1.0 | D | 0.829 | deleterious | None | None | None | None | N |
F/L | 0.8945 | likely_pathogenic | 0.8412 | pathogenic | -1.433 | Destabilizing | 0.999 | D | 0.631 | neutral | N | 0.474920026 | None | None | N |
F/M | 0.7783 | likely_pathogenic | 0.6911 | pathogenic | -1.02 | Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
F/N | 0.8775 | likely_pathogenic | 0.8164 | pathogenic | -1.947 | Destabilizing | 1.0 | D | 0.851 | deleterious | None | None | None | None | N |
F/P | 0.9986 | likely_pathogenic | 0.9968 | pathogenic | -1.864 | Destabilizing | 1.0 | D | 0.843 | deleterious | None | None | None | None | N |
F/Q | 0.92 | likely_pathogenic | 0.8731 | pathogenic | -1.937 | Destabilizing | 1.0 | D | 0.847 | deleterious | None | None | None | None | N |
F/R | 0.9062 | likely_pathogenic | 0.8545 | pathogenic | -1.113 | Destabilizing | 1.0 | D | 0.851 | deleterious | None | None | None | None | N |
F/S | 0.7516 | likely_pathogenic | 0.6156 | pathogenic | -2.464 | Highly Destabilizing | 1.0 | D | 0.772 | deleterious | N | 0.48072849 | None | None | N |
F/T | 0.8617 | likely_pathogenic | 0.7512 | pathogenic | -2.183 | Highly Destabilizing | 1.0 | D | 0.776 | deleterious | None | None | None | None | N |
F/V | 0.524 | ambiguous | 0.37 | ambiguous | -1.864 | Destabilizing | 1.0 | D | 0.72 | prob.delet. | N | 0.479267053 | None | None | N |
F/W | 0.6794 | likely_pathogenic | 0.6293 | pathogenic | -0.38 | Destabilizing | 1.0 | D | 0.749 | deleterious | None | None | None | None | N |
F/Y | 0.1142 | likely_benign | 0.1065 | benign | -0.74 | Destabilizing | 0.999 | D | 0.564 | neutral | N | 0.398056752 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.