Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 30179 | 90760;90761;90762 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
N2AB | 28538 | 85837;85838;85839 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
N2A | 27611 | 83056;83057;83058 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
N2B | 21114 | 63565;63566;63567 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
Novex-1 | 21239 | 63940;63941;63942 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
Novex-2 | 21306 | 64141;64142;64143 | chr2:178552365;178552364;178552363 | chr2:179417092;179417091;179417090 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs769360937 | -0.573 | 1.0 | N | 0.745 | 0.428 | 0.731906779097 | gnomAD-2.1.1 | 3.77E-05 | None | None | None | None | N | None | 4.16E-05 | 2.97E-05 | None | 0 | 5.21E-05 | None | 1.91791E-04 | None | 0 | 1.63E-05 | 0 |
R/C | rs769360937 | -0.573 | 1.0 | N | 0.745 | 0.428 | 0.731906779097 | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 7.24E-05 | 0 | 0 | 0 | 1.9305E-04 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/C | rs769360937 | -0.573 | 1.0 | N | 0.745 | 0.428 | 0.731906779097 | gnomAD-4.0.0 | 3.26224E-05 | None | None | None | None | N | None | 6.72676E-05 | 1.71562E-05 | None | 0 | 2.24406E-05 | None | 0 | 0 | 1.11161E-05 | 3.4391E-04 | 3.24971E-05 |
R/G | rs769360937 | -0.955 | 1.0 | N | 0.593 | 0.376 | 0.672020861447 | gnomAD-2.1.1 | 4.28E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.33E-06 | 0 |
R/G | rs769360937 | -0.955 | 1.0 | N | 0.593 | 0.376 | 0.672020861447 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/G | rs769360937 | -0.955 | 1.0 | N | 0.593 | 0.376 | 0.672020861447 | gnomAD-4.0.0 | 2.3212E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.07831E-05 | 0 | 1.62485E-05 |
R/H | rs149567378 | -1.163 | 1.0 | N | 0.753 | 0.403 | None | gnomAD-2.1.1 | 3.2551E-03 | None | None | None | None | N | None | 2.08247E-04 | 9.01605E-04 | None | 1.15128E-03 | 1.04515E-04 | None | 2.2189E-02 | None | 4.2E-05 | 1.83667E-03 | 2.98954E-03 |
R/H | rs149567378 | -1.163 | 1.0 | N | 0.753 | 0.403 | None | gnomAD-3.1.2 | 1.8407E-03 | None | None | None | None | N | None | 2.41348E-04 | 1.83582E-03 | 0 | 8.64055E-04 | 1.9305E-04 | None | 0 | 0 | 1.74933E-03 | 2.38391E-02 | 1.91388E-03 |
R/H | rs149567378 | -1.163 | 1.0 | N | 0.753 | 0.403 | None | 1000 genomes | 6.1901E-03 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 2E-03 | None | None | None | 2.86E-02 | None |
R/H | rs149567378 | -1.163 | 1.0 | N | 0.753 | 0.403 | None | gnomAD-4.0.0 | 2.16914E-03 | None | None | None | None | N | None | 3.09131E-04 | 1.08508E-03 | None | 8.47218E-04 | 2.01975E-04 | None | 4.74533E-05 | 4.19463E-03 | 1.09666E-03 | 2.12205E-02 | 2.97542E-03 |
R/P | rs149567378 | -0.334 | 1.0 | D | 0.703 | 0.488 | 0.593515057505 | gnomAD-2.1.1 | 4.32E-06 | None | None | None | None | N | None | 0 | 3.08E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/P | rs149567378 | -0.334 | 1.0 | D | 0.703 | 0.488 | 0.593515057505 | gnomAD-4.0.0 | 1.38834E-06 | None | None | None | None | N | None | 3.04451E-05 | 2.3371E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7266 | likely_pathogenic | 0.5677 | pathogenic | -0.878 | Destabilizing | 0.999 | D | 0.605 | neutral | None | None | None | None | N |
R/C | 0.2666 | likely_benign | 0.1933 | benign | -0.838 | Destabilizing | 1.0 | D | 0.745 | deleterious | N | 0.485367296 | None | None | N |
R/D | 0.8778 | likely_pathogenic | 0.7704 | pathogenic | 0.109 | Stabilizing | 1.0 | D | 0.708 | prob.delet. | None | None | None | None | N |
R/E | 0.7205 | likely_pathogenic | 0.5549 | ambiguous | 0.201 | Stabilizing | 0.999 | D | 0.647 | neutral | None | None | None | None | N |
R/F | 0.77 | likely_pathogenic | 0.6422 | pathogenic | -0.962 | Destabilizing | 1.0 | D | 0.719 | prob.delet. | None | None | None | None | N |
R/G | 0.5846 | likely_pathogenic | 0.4136 | ambiguous | -1.127 | Destabilizing | 1.0 | D | 0.593 | neutral | N | 0.513569706 | None | None | N |
R/H | 0.1482 | likely_benign | 0.107 | benign | -1.375 | Destabilizing | 1.0 | D | 0.753 | deleterious | N | 0.506566376 | None | None | N |
R/I | 0.5054 | ambiguous | 0.3673 | ambiguous | -0.225 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | N |
R/K | 0.1885 | likely_benign | 0.1387 | benign | -0.697 | Destabilizing | 0.998 | D | 0.511 | neutral | None | None | None | None | N |
R/L | 0.4824 | ambiguous | 0.3713 | ambiguous | -0.225 | Destabilizing | 1.0 | D | 0.593 | neutral | N | 0.503718072 | None | None | N |
R/M | 0.5636 | ambiguous | 0.4211 | ambiguous | -0.44 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | N |
R/N | 0.7525 | likely_pathogenic | 0.622 | pathogenic | -0.131 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | N |
R/P | 0.9489 | likely_pathogenic | 0.9191 | pathogenic | -0.423 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | D | 0.532328825 | None | None | N |
R/Q | 0.201 | likely_benign | 0.1459 | benign | -0.405 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
R/S | 0.7168 | likely_pathogenic | 0.5699 | pathogenic | -0.987 | Destabilizing | 1.0 | D | 0.67 | neutral | N | 0.446112563 | None | None | N |
R/T | 0.5083 | ambiguous | 0.3518 | ambiguous | -0.731 | Destabilizing | 1.0 | D | 0.657 | neutral | None | None | None | None | N |
R/V | 0.5971 | likely_pathogenic | 0.4552 | ambiguous | -0.423 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | None | None | None | None | N |
R/W | 0.3592 | ambiguous | 0.2676 | benign | -0.651 | Destabilizing | 1.0 | D | 0.752 | deleterious | None | None | None | None | N |
R/Y | 0.5656 | likely_pathogenic | 0.4453 | ambiguous | -0.33 | Destabilizing | 1.0 | D | 0.718 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.