Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31108 | 93547;93548;93549 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
N2AB | 29467 | 88624;88625;88626 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
N2A | 28540 | 85843;85844;85845 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
N2B | 22043 | 66352;66353;66354 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
Novex-1 | 22168 | 66727;66728;66729 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
Novex-2 | 22235 | 66928;66929;66930 | chr2:178548304;178548303;178548302 | chr2:179413031;179413030;179413029 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/N | None | None | 0.177 | N | 0.735 | 0.327 | 0.707919410837 | gnomAD-4.0.0 | 6.84176E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99441E-07 | 0 | 0 |
I/S | None | None | 0.03 | N | 0.547 | 0.305 | 0.71193717946 | gnomAD-4.0.0 | 2.05253E-06 | None | None | None | None | N | None | 2.98757E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79888E-06 | 0 | 0 |
I/T | rs373732722 | -2.249 | 0.001 | N | 0.281 | 0.256 | None | gnomAD-2.1.1 | 1.08672E-04 | None | None | None | None | N | None | 0 | 1.15902E-04 | None | 0 | 5.57E-05 | None | 2.28758E-04 | None | 5.57258E-04 | 2.67E-05 | 0 |
I/T | rs373732722 | -2.249 | 0.001 | N | 0.281 | 0.256 | None | gnomAD-3.1.2 | 6.57E-05 | None | None | None | None | N | None | 0 | 1.3101E-04 | 0 | 0 | 1.92678E-04 | None | 1.88182E-04 | 0 | 4.41E-05 | 4.1511E-04 | 0 |
I/T | rs373732722 | -2.249 | 0.001 | N | 0.281 | 0.256 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
I/T | rs373732722 | -2.249 | 0.001 | N | 0.281 | 0.256 | None | gnomAD-4.0.0 | 6.19626E-05 | None | None | None | None | N | None | 3.99787E-05 | 1.49985E-04 | None | 0 | 2.22836E-05 | None | 3.59252E-04 | 0 | 2.71232E-05 | 2.74508E-04 | 1.12032E-04 |
I/V | rs727504787 | -1.009 | None | N | 0.133 | 0.048 | 0.191931220699 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | N | None | 0 | 5.8E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/V | rs727504787 | -1.009 | None | N | 0.133 | 0.048 | 0.191931220699 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/V | rs727504787 | -1.009 | None | N | 0.133 | 0.048 | 0.191931220699 | gnomAD-4.0.0 | 1.05345E-05 | None | None | None | None | N | None | 1.33494E-05 | 3.33367E-05 | None | 0 | 0 | None | 0 | 0 | 9.32352E-06 | 0 | 4.80323E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.2466 | likely_benign | 0.2165 | benign | -1.95 | Destabilizing | 0.016 | N | 0.431 | neutral | None | None | None | None | N |
I/C | 0.6606 | likely_pathogenic | 0.6196 | pathogenic | -1.27 | Destabilizing | 0.685 | D | 0.52 | neutral | None | None | None | None | N |
I/D | 0.947 | likely_pathogenic | 0.9105 | pathogenic | -1.768 | Destabilizing | 0.221 | N | 0.713 | prob.delet. | None | None | None | None | N |
I/E | 0.8494 | likely_pathogenic | 0.767 | pathogenic | -1.586 | Destabilizing | 0.221 | N | 0.7 | prob.delet. | None | None | None | None | N |
I/F | 0.2259 | likely_benign | 0.1713 | benign | -1.16 | Destabilizing | 0.097 | N | 0.465 | neutral | N | 0.488531079 | None | None | N |
I/G | 0.7634 | likely_pathogenic | 0.7169 | pathogenic | -2.396 | Highly Destabilizing | 0.221 | N | 0.693 | prob.delet. | None | None | None | None | N |
I/H | 0.7686 | likely_pathogenic | 0.6723 | pathogenic | -1.501 | Destabilizing | 0.869 | D | 0.729 | deleterious | None | None | None | None | N |
I/K | 0.7217 | likely_pathogenic | 0.5982 | pathogenic | -1.342 | Destabilizing | 0.221 | N | 0.693 | prob.delet. | None | None | None | None | N |
I/L | 0.1095 | likely_benign | 0.09 | benign | -0.695 | Destabilizing | None | N | 0.176 | neutral | N | 0.462816274 | None | None | N |
I/M | 0.0974 | likely_benign | 0.0803 | benign | -0.721 | Destabilizing | 0.002 | N | 0.377 | neutral | N | 0.495367934 | None | None | N |
I/N | 0.7172 | likely_pathogenic | 0.6069 | pathogenic | -1.637 | Destabilizing | 0.177 | N | 0.735 | deleterious | N | 0.506888824 | None | None | N |
I/P | 0.9578 | likely_pathogenic | 0.941 | pathogenic | -1.092 | Destabilizing | 0.366 | N | 0.735 | deleterious | None | None | None | None | N |
I/Q | 0.6999 | likely_pathogenic | 0.588 | pathogenic | -1.54 | Destabilizing | 0.221 | N | 0.741 | deleterious | None | None | None | None | N |
I/R | 0.6231 | likely_pathogenic | 0.4812 | ambiguous | -1.072 | Destabilizing | 0.221 | N | 0.735 | deleterious | None | None | None | None | N |
I/S | 0.4843 | ambiguous | 0.3854 | ambiguous | -2.297 | Highly Destabilizing | 0.03 | N | 0.547 | neutral | N | 0.505621376 | None | None | N |
I/T | 0.1877 | likely_benign | 0.1638 | benign | -1.965 | Destabilizing | 0.001 | N | 0.281 | neutral | N | 0.475574477 | None | None | N |
I/V | 0.0521 | likely_benign | 0.0531 | benign | -1.092 | Destabilizing | None | N | 0.133 | neutral | N | 0.400939555 | None | None | N |
I/W | 0.8772 | likely_pathogenic | 0.8114 | pathogenic | -1.335 | Destabilizing | 0.869 | D | 0.753 | deleterious | None | None | None | None | N |
I/Y | 0.7265 | likely_pathogenic | 0.6143 | pathogenic | -1.05 | Destabilizing | 0.366 | N | 0.535 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.