Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31246 | 93961;93962;93963 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
N2AB | 29605 | 89038;89039;89040 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
N2A | 28678 | 86257;86258;86259 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
N2B | 22181 | 66766;66767;66768 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
Novex-1 | 22306 | 67141;67142;67143 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
Novex-2 | 22373 | 67342;67343;67344 | chr2:178547890;178547889;178547888 | chr2:179412617;179412616;179412615 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
K/R | rs775611779 | -0.052 | 0.002 | N | 0.379 | 0.101 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.34E-05 | 0 |
K/R | rs775611779 | -0.052 | 0.002 | N | 0.379 | 0.101 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 4.78927E-04 |
K/R | rs775611779 | -0.052 | 0.002 | N | 0.379 | 0.101 | None | gnomAD-4.0.0 | 1.30135E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.69516E-05 | 0 | 1.60118E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
K/A | 0.2312 | likely_benign | 0.2464 | benign | -0.044 | Destabilizing | 0.25 | N | 0.559 | neutral | None | None | None | None | I |
K/C | 0.6001 | likely_pathogenic | 0.6341 | pathogenic | -0.179 | Destabilizing | 0.982 | D | 0.709 | prob.delet. | None | None | None | None | I |
K/D | 0.5487 | ambiguous | 0.5985 | pathogenic | 0.031 | Stabilizing | 0.7 | D | 0.615 | neutral | None | None | None | None | I |
K/E | 0.1711 | likely_benign | 0.1768 | benign | 0.063 | Stabilizing | 0.201 | N | 0.545 | neutral | N | 0.486553676 | None | None | I |
K/F | 0.6938 | likely_pathogenic | 0.7573 | pathogenic | -0.052 | Destabilizing | 0.947 | D | 0.705 | prob.neutral | None | None | None | None | I |
K/G | 0.3983 | ambiguous | 0.4507 | ambiguous | -0.301 | Destabilizing | 0.399 | N | 0.577 | neutral | None | None | None | None | I |
K/H | 0.2596 | likely_benign | 0.2776 | benign | -0.604 | Destabilizing | 0.947 | D | 0.649 | neutral | None | None | None | None | I |
K/I | 0.2757 | likely_benign | 0.2919 | benign | 0.57 | Stabilizing | 0.781 | D | 0.716 | prob.delet. | N | 0.488316584 | None | None | I |
K/L | 0.2923 | likely_benign | 0.3291 | benign | 0.57 | Stabilizing | 0.399 | N | 0.577 | neutral | None | None | None | None | I |
K/M | 0.2049 | likely_benign | 0.2194 | benign | 0.311 | Stabilizing | 0.947 | D | 0.644 | neutral | None | None | None | None | I |
K/N | 0.383 | ambiguous | 0.4068 | ambiguous | 0.125 | Stabilizing | 0.638 | D | 0.577 | neutral | D | 0.524362703 | None | None | I |
K/P | 0.8463 | likely_pathogenic | 0.9088 | pathogenic | 0.395 | Stabilizing | 0.826 | D | 0.665 | neutral | None | None | None | None | I |
K/Q | 0.1286 | likely_benign | 0.1325 | benign | -0.022 | Destabilizing | 0.015 | N | 0.315 | neutral | N | 0.51470307 | None | None | I |
K/R | 0.0756 | likely_benign | 0.0774 | benign | -0.19 | Destabilizing | 0.002 | N | 0.379 | neutral | N | 0.496984101 | None | None | I |
K/S | 0.316 | likely_benign | 0.3407 | ambiguous | -0.372 | Destabilizing | 0.25 | N | 0.543 | neutral | None | None | None | None | I |
K/T | 0.1263 | likely_benign | 0.1316 | benign | -0.177 | Destabilizing | 0.638 | D | 0.608 | neutral | N | 0.425179931 | None | None | I |
K/V | 0.2159 | likely_benign | 0.227 | benign | 0.395 | Stabilizing | 0.7 | D | 0.647 | neutral | None | None | None | None | I |
K/W | 0.7184 | likely_pathogenic | 0.771 | pathogenic | -0.035 | Destabilizing | 0.982 | D | 0.693 | prob.neutral | None | None | None | None | I |
K/Y | 0.6007 | likely_pathogenic | 0.6396 | pathogenic | 0.287 | Stabilizing | 0.826 | D | 0.715 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.