Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31543 | 94852;94853;94854 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
N2AB | 29902 | 89929;89930;89931 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
N2A | 28975 | 87148;87149;87150 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
N2B | 22478 | 67657;67658;67659 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
Novex-1 | 22603 | 68032;68033;68034 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
Novex-2 | 22670 | 68233;68234;68235 | chr2:178546801;178546800;178546799 | chr2:179411528;179411527;179411526 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/M | rs397517759 | -1.891 | 0.627 | N | 0.565 | 0.299 | 0.545825192673 | gnomAD-2.1.1 | 7.67E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 5.88466E-04 | None | 0 | 8.94E-06 | 0 |
I/M | rs397517759 | -1.891 | 0.627 | N | 0.565 | 0.299 | 0.545825192673 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07211E-04 | 0 |
I/M | rs397517759 | -1.891 | 0.627 | N | 0.565 | 0.299 | 0.545825192673 | gnomAD-4.0.0 | 5.32967E-05 | None | None | None | None | N | None | 0 | 0 | None | 3.37975E-05 | 0 | None | 0 | 1.65071E-04 | 1.69548E-05 | 6.80825E-04 | 3.20184E-05 |
I/T | rs749659528 | -3.616 | 0.324 | D | 0.595 | 0.474 | 0.719986826817 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
I/T | rs749659528 | -3.616 | 0.324 | D | 0.595 | 0.474 | 0.719986826817 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/T | rs749659528 | -3.616 | 0.324 | D | 0.595 | 0.474 | 0.719986826817 | gnomAD-4.0.0 | 6.81771E-06 | None | None | None | None | N | None | 0 | 3.33467E-05 | None | 0 | 0 | None | 0 | 0 | 5.08638E-06 | 3.29446E-05 | 0 |
I/V | rs771491701 | -2.142 | None | N | 0.155 | 0.082 | None | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.94E-06 | 0 |
I/V | rs771491701 | -2.142 | None | N | 0.155 | 0.082 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
I/V | rs771491701 | -2.142 | None | N | 0.155 | 0.082 | None | gnomAD-4.0.0 | 1.30154E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.61072E-05 | 2.19597E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.9226 | likely_pathogenic | 0.9092 | pathogenic | -3.188 | Highly Destabilizing | 0.116 | N | 0.6 | neutral | None | None | None | None | N |
I/C | 0.9796 | likely_pathogenic | 0.9765 | pathogenic | -2.227 | Highly Destabilizing | 0.944 | D | 0.775 | deleterious | None | None | None | None | N |
I/D | 0.9997 | likely_pathogenic | 0.9996 | pathogenic | -3.859 | Highly Destabilizing | 0.818 | D | 0.821 | deleterious | None | None | None | None | N |
I/E | 0.9987 | likely_pathogenic | 0.9982 | pathogenic | -3.54 | Highly Destabilizing | 0.818 | D | 0.802 | deleterious | None | None | None | None | N |
I/F | 0.9559 | likely_pathogenic | 0.9327 | pathogenic | -1.952 | Destabilizing | 0.69 | D | 0.589 | neutral | None | None | None | None | N |
I/G | 0.997 | likely_pathogenic | 0.9962 | pathogenic | -3.774 | Highly Destabilizing | 0.563 | D | 0.772 | deleterious | None | None | None | None | N |
I/H | 0.9993 | likely_pathogenic | 0.9991 | pathogenic | -3.343 | Highly Destabilizing | 0.981 | D | 0.866 | deleterious | None | None | None | None | N |
I/K | 0.9982 | likely_pathogenic | 0.9974 | pathogenic | -2.581 | Highly Destabilizing | 0.773 | D | 0.803 | deleterious | D | 0.542470629 | None | None | N |
I/L | 0.4917 | ambiguous | 0.4258 | ambiguous | -1.402 | Destabilizing | 0.018 | N | 0.281 | neutral | N | 0.505997868 | None | None | N |
I/M | 0.7034 | likely_pathogenic | 0.6414 | pathogenic | -1.495 | Destabilizing | 0.627 | D | 0.565 | neutral | N | 0.499830111 | None | None | N |
I/N | 0.9971 | likely_pathogenic | 0.996 | pathogenic | -3.307 | Highly Destabilizing | 0.932 | D | 0.855 | deleterious | None | None | None | None | N |
I/P | 0.9937 | likely_pathogenic | 0.9918 | pathogenic | -1.993 | Destabilizing | 0.932 | D | 0.845 | deleterious | None | None | None | None | N |
I/Q | 0.9983 | likely_pathogenic | 0.9976 | pathogenic | -2.968 | Highly Destabilizing | 0.932 | D | 0.86 | deleterious | None | None | None | None | N |
I/R | 0.9964 | likely_pathogenic | 0.9951 | pathogenic | -2.524 | Highly Destabilizing | 0.773 | D | 0.855 | deleterious | D | 0.542470629 | None | None | N |
I/S | 0.9852 | likely_pathogenic | 0.982 | pathogenic | -3.821 | Highly Destabilizing | 0.388 | N | 0.729 | prob.delet. | None | None | None | None | N |
I/T | 0.8613 | likely_pathogenic | 0.8359 | pathogenic | -3.349 | Highly Destabilizing | 0.324 | N | 0.595 | neutral | D | 0.54221714 | None | None | N |
I/V | 0.0695 | likely_benign | 0.0703 | benign | -1.993 | Destabilizing | None | N | 0.155 | neutral | N | 0.39480023 | None | None | N |
I/W | 0.9993 | likely_pathogenic | 0.999 | pathogenic | -2.318 | Highly Destabilizing | 0.981 | D | 0.839 | deleterious | None | None | None | None | N |
I/Y | 0.9979 | likely_pathogenic | 0.9968 | pathogenic | -2.197 | Highly Destabilizing | 0.818 | D | 0.732 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.