Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32444 | 97555;97556;97557 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
N2AB | 30803 | 92632;92633;92634 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
N2A | 29876 | 89851;89852;89853 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
N2B | 23379 | 70360;70361;70362 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
Novex-1 | 23504 | 70735;70736;70737 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
Novex-2 | 23571 | 70936;70937;70938 | chr2:178542426;178542425;178542424 | chr2:179407153;179407152;179407151 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs776164829 | 0.107 | 1.0 | N | 0.722 | 0.446 | 0.661710244528 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
R/C | rs776164829 | 0.107 | 1.0 | N | 0.722 | 0.446 | 0.661710244528 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 2.06954E-04 | 0 |
R/C | rs776164829 | 0.107 | 1.0 | N | 0.722 | 0.446 | 0.661710244528 | gnomAD-4.0.0 | 2.16912E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 1.64528E-04 | 2.79725E-05 | 1.09782E-05 | 0 |
R/H | rs184922462 | -1.123 | 1.0 | N | 0.67 | 0.31 | 0.285698343383 | gnomAD-2.1.1 | 2.42E-05 | None | None | None | None | N | None | 0 | 1.16077E-04 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
R/H | rs184922462 | -1.123 | 1.0 | N | 0.67 | 0.31 | 0.285698343383 | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 9.56023E-04 |
R/H | rs184922462 | -1.123 | 1.0 | N | 0.67 | 0.31 | 0.285698343383 | gnomAD-4.0.0 | 4.09039E-05 | None | None | None | None | N | None | 0 | 1.00023E-04 | None | 0 | 0 | None | 0 | 0 | 4.74692E-05 | 0 | 6.40471E-05 |
R/P | rs184922462 | 0.447 | 1.0 | N | 0.592 | 0.428 | None | gnomAD-2.1.1 | 2.71667E-04 | None | None | None | None | N | None | 0 | 1.16121E-03 | None | 0 | 0 | None | 0 | None | 0 | 2.26974E-04 | 8.43882E-04 |
R/P | rs184922462 | 0.447 | 1.0 | N | 0.592 | 0.428 | None | gnomAD-3.1.2 | 2.89249E-04 | None | None | None | None | N | None | 4.83E-05 | 1.76817E-03 | 0 | 0 | 0 | None | 0 | 0 | 1.76465E-04 | 0 | 1.43403E-03 |
R/P | rs184922462 | 0.447 | 1.0 | N | 0.592 | 0.428 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
R/P | rs184922462 | 0.447 | 1.0 | N | 0.592 | 0.428 | None | gnomAD-4.0.0 | 2.41067E-04 | None | None | None | None | N | None | 7.99723E-05 | 1.49985E-03 | None | 0 | 0 | None | 0 | 0 | 2.28023E-04 | 0 | 3.84148E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8234 | likely_pathogenic | 0.782 | pathogenic | -0.029 | Destabilizing | 0.999 | D | 0.458 | neutral | None | None | None | None | N |
R/C | 0.3872 | ambiguous | 0.3171 | benign | -0.094 | Destabilizing | 1.0 | D | 0.722 | prob.delet. | N | 0.48233347 | None | None | N |
R/D | 0.9517 | likely_pathogenic | 0.9393 | pathogenic | -0.02 | Destabilizing | 1.0 | D | 0.585 | neutral | None | None | None | None | N |
R/E | 0.7939 | likely_pathogenic | 0.7499 | pathogenic | 0.057 | Stabilizing | 0.999 | D | 0.531 | neutral | None | None | None | None | N |
R/F | 0.8508 | likely_pathogenic | 0.8118 | pathogenic | -0.171 | Destabilizing | 1.0 | D | 0.697 | prob.neutral | None | None | None | None | N |
R/G | 0.7339 | likely_pathogenic | 0.6665 | pathogenic | -0.252 | Destabilizing | 1.0 | D | 0.507 | neutral | N | 0.442652892 | None | None | N |
R/H | 0.2078 | likely_benign | 0.168 | benign | -0.779 | Destabilizing | 1.0 | D | 0.67 | neutral | N | 0.477229612 | None | None | N |
R/I | 0.6152 | likely_pathogenic | 0.5753 | pathogenic | 0.53 | Stabilizing | 1.0 | D | 0.688 | prob.neutral | None | None | None | None | N |
R/K | 0.2394 | likely_benign | 0.2178 | benign | -0.084 | Destabilizing | 0.998 | D | 0.427 | neutral | None | None | None | None | N |
R/L | 0.5181 | ambiguous | 0.4698 | ambiguous | 0.53 | Stabilizing | 1.0 | D | 0.507 | neutral | N | 0.516729363 | None | None | N |
R/M | 0.6596 | likely_pathogenic | 0.6008 | pathogenic | 0.088 | Stabilizing | 1.0 | D | 0.632 | neutral | None | None | None | None | N |
R/N | 0.8822 | likely_pathogenic | 0.8547 | pathogenic | 0.203 | Stabilizing | 1.0 | D | 0.629 | neutral | None | None | None | None | N |
R/P | 0.9761 | likely_pathogenic | 0.9662 | pathogenic | 0.365 | Stabilizing | 1.0 | D | 0.592 | neutral | N | 0.510072749 | None | None | N |
R/Q | 0.2018 | likely_benign | 0.1709 | benign | 0.105 | Stabilizing | 1.0 | D | 0.627 | neutral | None | None | None | None | N |
R/S | 0.8495 | likely_pathogenic | 0.8075 | pathogenic | -0.182 | Destabilizing | 1.0 | D | 0.551 | neutral | N | 0.373601025 | None | None | N |
R/T | 0.6989 | likely_pathogenic | 0.6421 | pathogenic | 0.039 | Stabilizing | 1.0 | D | 0.552 | neutral | None | None | None | None | N |
R/V | 0.7022 | likely_pathogenic | 0.6605 | pathogenic | 0.365 | Stabilizing | 1.0 | D | 0.651 | neutral | None | None | None | None | N |
R/W | 0.4728 | ambiguous | 0.3971 | ambiguous | -0.18 | Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | N |
R/Y | 0.7171 | likely_pathogenic | 0.6555 | pathogenic | 0.216 | Stabilizing | 1.0 | D | 0.637 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.