Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32833 | 98722;98723;98724 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
N2AB | 31192 | 93799;93800;93801 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
N2A | 30265 | 91018;91019;91020 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
N2B | 23768 | 71527;71528;71529 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
Novex-1 | 23893 | 71902;71903;71904 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
Novex-2 | 23960 | 72103;72104;72105 | chr2:178539568;178539567;178539566 | chr2:179404295;179404294;179404293 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs1368567004 | -1.764 | 0.782 | N | 0.679 | 0.319 | 0.657373984822 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.64E-05 | 0 | 0 |
L/F | rs1368567004 | -1.764 | 0.782 | N | 0.679 | 0.319 | 0.657373984822 | gnomAD-4.0.0 | 1.59111E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.88232E-05 | 0 | 0 | 0 | 0 |
L/P | None | None | 0.957 | N | 0.876 | 0.66 | 0.855347383591 | gnomAD-4.0.0 | 1.59113E-06 | None | None | None | None | N | None | 0 | 0 | None | 4.76644E-05 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7984 | likely_pathogenic | 0.7277 | pathogenic | -2.992 | Highly Destabilizing | 0.218 | N | 0.667 | neutral | None | None | None | None | N |
L/C | 0.843 | likely_pathogenic | 0.8044 | pathogenic | -2.089 | Highly Destabilizing | 0.973 | D | 0.794 | deleterious | None | None | None | None | N |
L/D | 0.9988 | likely_pathogenic | 0.9978 | pathogenic | -3.618 | Highly Destabilizing | 0.906 | D | 0.876 | deleterious | None | None | None | None | N |
L/E | 0.9919 | likely_pathogenic | 0.9855 | pathogenic | -3.276 | Highly Destabilizing | 0.906 | D | 0.869 | deleterious | None | None | None | None | N |
L/F | 0.715 | likely_pathogenic | 0.6351 | pathogenic | -1.733 | Destabilizing | 0.782 | D | 0.679 | prob.neutral | N | 0.500254049 | None | None | N |
L/G | 0.9794 | likely_pathogenic | 0.9635 | pathogenic | -3.622 | Highly Destabilizing | 0.906 | D | 0.856 | deleterious | None | None | None | None | N |
L/H | 0.9871 | likely_pathogenic | 0.9773 | pathogenic | -3.259 | Highly Destabilizing | 0.988 | D | 0.877 | deleterious | N | 0.500507539 | None | None | N |
L/I | 0.0817 | likely_benign | 0.0738 | benign | -1.078 | Destabilizing | 0.003 | N | 0.313 | neutral | N | 0.369192496 | None | None | N |
L/K | 0.9909 | likely_pathogenic | 0.9857 | pathogenic | -2.263 | Highly Destabilizing | 0.906 | D | 0.815 | deleterious | None | None | None | None | N |
L/M | 0.3134 | likely_benign | 0.2747 | benign | -1.284 | Destabilizing | 0.826 | D | 0.629 | neutral | None | None | None | None | N |
L/N | 0.993 | likely_pathogenic | 0.9879 | pathogenic | -3.035 | Highly Destabilizing | 0.967 | D | 0.887 | deleterious | None | None | None | None | N |
L/P | 0.9855 | likely_pathogenic | 0.9733 | pathogenic | -1.71 | Destabilizing | 0.957 | D | 0.876 | deleterious | N | 0.488986649 | None | None | N |
L/Q | 0.976 | likely_pathogenic | 0.9608 | pathogenic | -2.641 | Highly Destabilizing | 0.967 | D | 0.871 | deleterious | None | None | None | None | N |
L/R | 0.9818 | likely_pathogenic | 0.9707 | pathogenic | -2.353 | Highly Destabilizing | 0.879 | D | 0.859 | deleterious | N | 0.500507539 | None | None | N |
L/S | 0.9741 | likely_pathogenic | 0.9548 | pathogenic | -3.579 | Highly Destabilizing | 0.826 | D | 0.778 | deleterious | None | None | None | None | N |
L/T | 0.8149 | likely_pathogenic | 0.7407 | pathogenic | -3.066 | Highly Destabilizing | 0.575 | D | 0.661 | neutral | None | None | None | None | N |
L/V | 0.0815 | likely_benign | 0.0627 | benign | -1.71 | Destabilizing | 0.001 | N | 0.331 | neutral | N | 0.348619649 | None | None | N |
L/W | 0.9674 | likely_pathogenic | 0.946 | pathogenic | -2.082 | Highly Destabilizing | 0.991 | D | 0.837 | deleterious | None | None | None | None | N |
L/Y | 0.9777 | likely_pathogenic | 0.9636 | pathogenic | -1.942 | Destabilizing | 0.906 | D | 0.77 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.