Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3295 | 10108;10109;10110 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
N2AB | 3295 | 10108;10109;10110 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
N2A | 3295 | 10108;10109;10110 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
N2B | 3249 | 9970;9971;9972 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
Novex-1 | 3249 | 9970;9971;9972 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
Novex-2 | 3249 | 9970;9971;9972 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
Novex-3 | 3295 | 10108;10109;10110 | chr2:178764632;178764631;178764630 | chr2:179629359;179629358;179629357 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs145053177 | -0.996 | 0.489 | D | 0.661 | 0.353 | None | gnomAD-2.1.1 | 2.12E-05 | None | None | None | None | N | None | 2.40288E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
T/A | rs145053177 | -0.996 | 0.489 | D | 0.661 | 0.353 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 9.66E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/A | rs145053177 | -0.996 | 0.489 | D | 0.661 | 0.353 | None | gnomAD-4.0.0 | 4.95672E-06 | None | None | None | None | N | None | 1.06806E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/M | rs191708454 | -0.147 | 0.843 | D | 0.627 | 0.461 | None | gnomAD-2.1.1 | 2.54923E-04 | None | None | None | None | N | None | 0 | 1.73561E-04 | None | 0 | 5.45E-05 | None | 1.79656E-03 | None | 0 | 1.76E-05 | 0 |
T/M | rs191708454 | -0.147 | 0.843 | D | 0.627 | 0.461 | None | gnomAD-3.1.2 | 7.23E-05 | None | None | None | None | N | None | 2.42E-05 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 1.24481E-03 | 4.78469E-04 |
T/M | rs191708454 | -0.147 | 0.843 | D | 0.627 | 0.461 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
T/M | rs191708454 | -0.147 | 0.843 | D | 0.627 | 0.461 | None | gnomAD-4.0.0 | 1.08423E-04 | None | None | None | None | N | None | 1.33326E-05 | 1.16647E-04 | None | 0 | 0 | None | 1.56167E-05 | 3.3036E-04 | 1.44068E-05 | 1.52626E-03 | 1.27992E-04 |
T/P | rs145053177 | None | 0.97 | D | 0.752 | 0.577 | 0.598497351524 | gnomAD-4.0.0 | 6.84071E-07 | None | None | None | None | N | None | 0 | 2.23624E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.3095 | likely_benign | 0.458 | ambiguous | -0.964 | Destabilizing | 0.489 | N | 0.661 | neutral | D | 0.558565744 | None | None | N |
T/C | 0.704 | likely_pathogenic | 0.7769 | pathogenic | -0.669 | Destabilizing | 0.998 | D | 0.726 | prob.delet. | None | None | None | None | N |
T/D | 0.9414 | likely_pathogenic | 0.9652 | pathogenic | -1.691 | Destabilizing | 0.86 | D | 0.725 | prob.delet. | None | None | None | None | N |
T/E | 0.8426 | likely_pathogenic | 0.889 | pathogenic | -1.445 | Destabilizing | 0.754 | D | 0.719 | prob.delet. | None | None | None | None | N |
T/F | 0.7493 | likely_pathogenic | 0.8455 | pathogenic | -0.51 | Destabilizing | 0.956 | D | 0.765 | deleterious | None | None | None | None | N |
T/G | 0.79 | likely_pathogenic | 0.8557 | pathogenic | -1.411 | Destabilizing | 0.86 | D | 0.742 | deleterious | None | None | None | None | N |
T/H | 0.6502 | likely_pathogenic | 0.7581 | pathogenic | -1.561 | Destabilizing | 0.994 | D | 0.76 | deleterious | None | None | None | None | N |
T/I | 0.5364 | ambiguous | 0.7019 | pathogenic | 0.225 | Stabilizing | 0.915 | D | 0.751 | deleterious | None | None | None | None | N |
T/K | 0.7576 | likely_pathogenic | 0.8717 | pathogenic | -0.4 | Destabilizing | 0.855 | D | 0.728 | prob.delet. | D | 0.590934058 | None | None | N |
T/L | 0.352 | ambiguous | 0.5015 | ambiguous | 0.225 | Stabilizing | 0.514 | D | 0.695 | prob.neutral | None | None | None | None | N |
T/M | 0.1915 | likely_benign | 0.3129 | benign | 0.028 | Stabilizing | 0.843 | D | 0.627 | neutral | D | 0.663511483 | None | None | N |
T/N | 0.5719 | likely_pathogenic | 0.7052 | pathogenic | -1.258 | Destabilizing | 0.956 | D | 0.688 | prob.neutral | None | None | None | None | N |
T/P | 0.9073 | likely_pathogenic | 0.958 | pathogenic | -0.141 | Destabilizing | 0.97 | D | 0.752 | deleterious | D | 0.679219875 | None | None | N |
T/Q | 0.6092 | likely_pathogenic | 0.7158 | pathogenic | -0.877 | Destabilizing | 0.356 | N | 0.567 | neutral | None | None | None | None | N |
T/R | 0.6648 | likely_pathogenic | 0.8192 | pathogenic | -0.813 | Destabilizing | 0.976 | D | 0.746 | deleterious | D | 0.568348806 | None | None | N |
T/S | 0.3099 | likely_benign | 0.4314 | ambiguous | -1.405 | Destabilizing | 0.153 | N | 0.48 | neutral | N | 0.49322956 | None | None | N |
T/V | 0.3814 | ambiguous | 0.4979 | ambiguous | -0.141 | Destabilizing | 0.754 | D | 0.683 | prob.neutral | None | None | None | None | N |
T/W | 0.9165 | likely_pathogenic | 0.9432 | pathogenic | -0.831 | Destabilizing | 0.998 | D | 0.765 | deleterious | None | None | None | None | N |
T/Y | 0.7518 | likely_pathogenic | 0.8247 | pathogenic | -0.376 | Destabilizing | 0.978 | D | 0.766 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.