Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 33380 | 100363;100364;100365 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
N2AB | 31739 | 95440;95441;95442 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
N2A | 30812 | 92659;92660;92661 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
N2B | 24315 | 73168;73169;73170 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
Novex-1 | 24440 | 73543;73544;73545 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
Novex-2 | 24507 | 73744;73745;73746 | chr2:178536971;178536970;178536969 | chr2:179401698;179401697;179401696 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/E | rs1461056252 | -1.019 | 0.966 | N | 0.713 | 0.36 | 0.698509492642 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.92E-06 | 0 |
V/E | rs1461056252 | -1.019 | 0.966 | N | 0.713 | 0.36 | 0.698509492642 | gnomAD-4.0.0 | 7.96435E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.43032E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.3227 | likely_benign | 0.2574 | benign | -1.092 | Destabilizing | 0.622 | D | 0.718 | prob.delet. | N | 0.420757467 | None | None | N |
V/C | 0.8263 | likely_pathogenic | 0.7796 | pathogenic | -0.788 | Destabilizing | 0.998 | D | 0.687 | prob.delet. | None | None | None | None | N |
V/D | 0.644 | likely_pathogenic | 0.5719 | pathogenic | -0.373 | Destabilizing | 0.974 | D | 0.805 | deleterious | None | None | None | None | N |
V/E | 0.653 | likely_pathogenic | 0.5921 | pathogenic | -0.263 | Destabilizing | 0.966 | D | 0.713 | prob.delet. | N | 0.427491438 | None | None | N |
V/F | 0.3328 | likely_benign | 0.2605 | benign | -0.495 | Destabilizing | 0.949 | D | 0.751 | deleterious | None | None | None | None | N |
V/G | 0.3227 | likely_benign | 0.2935 | benign | -1.51 | Destabilizing | 0.966 | D | 0.767 | deleterious | N | 0.469108774 | None | None | N |
V/H | 0.8561 | likely_pathogenic | 0.8189 | pathogenic | -1.077 | Destabilizing | 0.998 | D | 0.845 | deleterious | None | None | None | None | N |
V/I | 0.0941 | likely_benign | 0.0839 | benign | -0.012 | Destabilizing | 0.007 | N | 0.139 | neutral | None | None | None | None | N |
V/K | 0.7661 | likely_pathogenic | 0.7352 | pathogenic | -0.713 | Destabilizing | 0.974 | D | 0.725 | deleterious | None | None | None | None | N |
V/L | 0.2998 | likely_benign | 0.2434 | benign | -0.012 | Destabilizing | 0.264 | N | 0.493 | neutral | N | 0.424355132 | None | None | N |
V/M | 0.2714 | likely_benign | 0.2007 | benign | -0.198 | Destabilizing | 0.933 | D | 0.684 | prob.delet. | N | 0.468762057 | None | None | N |
V/N | 0.4448 | ambiguous | 0.4041 | ambiguous | -0.725 | Destabilizing | 0.974 | D | 0.813 | deleterious | None | None | None | None | N |
V/P | 0.8637 | likely_pathogenic | 0.8212 | pathogenic | -0.337 | Destabilizing | 0.991 | D | 0.772 | deleterious | None | None | None | None | N |
V/Q | 0.7036 | likely_pathogenic | 0.6638 | pathogenic | -0.653 | Destabilizing | 0.991 | D | 0.763 | deleterious | None | None | None | None | N |
V/R | 0.7445 | likely_pathogenic | 0.7146 | pathogenic | -0.584 | Destabilizing | 0.974 | D | 0.825 | deleterious | None | None | None | None | N |
V/S | 0.3308 | likely_benign | 0.2907 | benign | -1.417 | Destabilizing | 0.725 | D | 0.763 | deleterious | None | None | None | None | N |
V/T | 0.2434 | likely_benign | 0.211 | benign | -1.163 | Destabilizing | 0.066 | N | 0.411 | neutral | None | None | None | None | N |
V/W | 0.9448 | likely_pathogenic | 0.9185 | pathogenic | -0.787 | Destabilizing | 0.998 | D | 0.845 | deleterious | None | None | None | None | N |
V/Y | 0.7688 | likely_pathogenic | 0.7096 | pathogenic | -0.391 | Destabilizing | 0.991 | D | 0.685 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.