Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 34199 | 102820;102821;102822 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
N2AB | 32558 | 97897;97898;97899 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
N2A | 31631 | 95116;95117;95118 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
N2B | 25134 | 75625;75626;75627 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
Novex-1 | 25259 | 76000;76001;76002 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
Novex-2 | 25326 | 76201;76202;76203 | chr2:178534020;178534019;178534018 | chr2:179398747;179398746;179398745 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/M | rs749009190 | -1.193 | 0.968 | D | 0.605 | 0.444 | 0.564429724435 | gnomAD-2.1.1 | 4.01E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.64E-05 | 0 | 0 |
I/M | rs749009190 | -1.193 | 0.968 | D | 0.605 | 0.444 | 0.564429724435 | gnomAD-4.0.0 | 3.182E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.76605E-05 | 0 | 0 | 0 | 0 |
I/V | rs56347248 | -1.471 | 0.437 | N | 0.453 | 0.126 | None | gnomAD-2.1.1 | 3.38351E-03 | None | None | None | None | N | None | 1.23967E-04 | 7.63964E-04 | None | 1.0626E-03 | 0 | None | 2.17334E-02 | None | 4E-05 | 1.72247E-03 | 2.94118E-03 |
I/V | rs56347248 | -1.471 | 0.437 | N | 0.453 | 0.126 | None | gnomAD-3.1.2 | 1.72112E-03 | None | None | None | None | N | None | 1.68789E-04 | 1.6357E-03 | 0 | 8.64055E-04 | 0 | None | 0 | 0 | 1.64628E-03 | 2.31884E-02 | 1.43541E-03 |
I/V | rs56347248 | -1.471 | 0.437 | N | 0.453 | 0.126 | None | 1000 genomes | 5.99042E-03 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 2E-03 | None | None | None | 2.76E-02 | None |
I/V | rs56347248 | -1.471 | 0.437 | N | 0.453 | 0.126 | None | gnomAD-4.0.0 | 2.16048E-03 | None | None | None | None | N | None | 2.39783E-04 | 9.33022E-04 | None | 8.44423E-04 | 4.45593E-05 | None | 6.2498E-05 | 4.12405E-03 | 1.06368E-03 | 2.12336E-02 | 2.6886E-03 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.7835 | likely_pathogenic | 0.859 | pathogenic | -2.207 | Highly Destabilizing | 0.702 | D | 0.564 | neutral | None | None | None | None | N |
I/C | 0.9117 | likely_pathogenic | 0.9387 | pathogenic | -1.887 | Destabilizing | 0.076 | N | 0.499 | neutral | None | None | None | None | N |
I/D | 0.9842 | likely_pathogenic | 0.9908 | pathogenic | -2.633 | Highly Destabilizing | 0.996 | D | 0.707 | prob.neutral | None | None | None | None | N |
I/E | 0.9709 | likely_pathogenic | 0.9813 | pathogenic | -2.584 | Highly Destabilizing | 0.996 | D | 0.705 | prob.neutral | None | None | None | None | N |
I/F | 0.5983 | likely_pathogenic | 0.6794 | pathogenic | -1.654 | Destabilizing | 0.968 | D | 0.651 | neutral | N | 0.489966106 | None | None | N |
I/G | 0.9695 | likely_pathogenic | 0.9817 | pathogenic | -2.576 | Highly Destabilizing | 0.988 | D | 0.688 | prob.neutral | None | None | None | None | N |
I/H | 0.963 | likely_pathogenic | 0.9795 | pathogenic | -1.736 | Destabilizing | 0.999 | D | 0.684 | prob.neutral | None | None | None | None | N |
I/K | 0.9194 | likely_pathogenic | 0.9491 | pathogenic | -1.652 | Destabilizing | 0.996 | D | 0.697 | prob.neutral | None | None | None | None | N |
I/L | 0.2738 | likely_benign | 0.3102 | benign | -1.214 | Destabilizing | 0.011 | N | 0.265 | neutral | N | 0.486884537 | None | None | N |
I/M | 0.2189 | likely_benign | 0.2605 | benign | -1.085 | Destabilizing | 0.968 | D | 0.605 | neutral | D | 0.529734024 | None | None | N |
I/N | 0.8222 | likely_pathogenic | 0.8777 | pathogenic | -1.709 | Destabilizing | 0.995 | D | 0.702 | prob.neutral | N | 0.50857734 | None | None | N |
I/P | 0.9641 | likely_pathogenic | 0.9724 | pathogenic | -1.52 | Destabilizing | 0.996 | D | 0.702 | prob.neutral | None | None | None | None | N |
I/Q | 0.9452 | likely_pathogenic | 0.9632 | pathogenic | -1.908 | Destabilizing | 0.996 | D | 0.706 | prob.neutral | None | None | None | None | N |
I/R | 0.8915 | likely_pathogenic | 0.9283 | pathogenic | -1.02 | Destabilizing | 0.996 | D | 0.703 | prob.neutral | None | None | None | None | N |
I/S | 0.8263 | likely_pathogenic | 0.8937 | pathogenic | -2.311 | Highly Destabilizing | 0.968 | D | 0.659 | neutral | N | 0.507563382 | None | None | N |
I/T | 0.6466 | likely_pathogenic | 0.7513 | pathogenic | -2.144 | Highly Destabilizing | 0.896 | D | 0.631 | neutral | N | 0.510974905 | None | None | N |
I/V | 0.1107 | likely_benign | 0.1309 | benign | -1.52 | Destabilizing | 0.437 | N | 0.453 | neutral | N | 0.430236247 | None | None | N |
I/W | 0.985 | likely_pathogenic | 0.9888 | pathogenic | -1.795 | Destabilizing | 0.999 | D | 0.683 | prob.neutral | None | None | None | None | N |
I/Y | 0.9208 | likely_pathogenic | 0.9403 | pathogenic | -1.566 | Destabilizing | 0.996 | D | 0.676 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.