Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 35013 | 105262;105263;105264 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
N2AB | 33372 | 100339;100340;100341 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
N2A | 32445 | 97558;97559;97560 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
N2B | 25948 | 78067;78068;78069 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
Novex-1 | 26073 | 78442;78443;78444 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
Novex-2 | 26140 | 78643;78644;78645 | chr2:178531578;178531577;178531576 | chr2:179396305;179396304;179396303 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs568460311 | -1.613 | 1.0 | N | 0.816 | 0.368 | None | gnomAD-2.1.1 | 9.27E-05 | None | None | None | None | N | None | 2.06714E-04 | 2.83E-05 | None | 0 | 4.10256E-04 | None | 0 | None | 8E-05 | 7.8E-05 | 0 |
R/C | rs568460311 | -1.613 | 1.0 | N | 0.816 | 0.368 | None | gnomAD-3.1.2 | 9.2E-05 | None | None | None | None | N | None | 1.69033E-04 | 6.54E-05 | 0 | 0 | 3.85356E-04 | None | 0 | 0 | 2.94E-05 | 0 | 9.57854E-04 |
R/C | rs568460311 | -1.613 | 1.0 | N | 0.816 | 0.368 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs568460311 | -1.613 | 1.0 | N | 0.816 | 0.368 | None | gnomAD-4.0.0 | 3.65566E-05 | None | None | None | None | N | None | 1.86637E-04 | 3.33189E-05 | None | 0 | 2.22876E-04 | None | 9.37266E-05 | 0 | 1.61035E-05 | 0 | 1.28033E-04 |
R/H | rs779484675 | -1.995 | 1.0 | N | 0.751 | 0.421 | None | gnomAD-2.1.1 | 3.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.96066E-04 | None | 0 | 1.77E-05 | 0 |
R/H | rs779484675 | -1.995 | 1.0 | N | 0.751 | 0.421 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 6.54E-05 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs779484675 | -1.995 | 1.0 | N | 0.751 | 0.421 | None | gnomAD-4.0.0 | 2.85035E-05 | None | None | None | None | N | None | 1.33518E-05 | 1.6665E-05 | None | 0 | 0 | None | 1.5623E-05 | 0 | 2.11883E-05 | 1.97624E-04 | 0 |
R/P | None | None | 1.0 | N | 0.781 | 0.527 | 0.41441075005 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.92604E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/P | None | None | 1.0 | N | 0.781 | 0.527 | 0.41441075005 | gnomAD-4.0.0 | 6.57237E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.92604E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/S | rs568460311 | -2.031 | 1.0 | N | 0.743 | 0.429 | 0.262662153117 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/S | rs568460311 | -2.031 | 1.0 | N | 0.743 | 0.429 | 0.262662153117 | gnomAD-4.0.0 | 1.3683E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.31868E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9561 | likely_pathogenic | 0.9741 | pathogenic | -1.484 | Destabilizing | 0.999 | D | 0.597 | neutral | None | None | None | None | N |
R/C | 0.6668 | likely_pathogenic | 0.7745 | pathogenic | -1.467 | Destabilizing | 1.0 | D | 0.816 | deleterious | N | 0.505637217 | None | None | N |
R/D | 0.9925 | likely_pathogenic | 0.9961 | pathogenic | -0.146 | Destabilizing | 1.0 | D | 0.776 | deleterious | None | None | None | None | N |
R/E | 0.9026 | likely_pathogenic | 0.9419 | pathogenic | 0.009 | Stabilizing | 0.999 | D | 0.607 | neutral | None | None | None | None | N |
R/F | 0.958 | likely_pathogenic | 0.9752 | pathogenic | -1.171 | Destabilizing | 1.0 | D | 0.821 | deleterious | None | None | None | None | N |
R/G | 0.9292 | likely_pathogenic | 0.9608 | pathogenic | -1.806 | Destabilizing | 1.0 | D | 0.733 | prob.delet. | N | 0.475544342 | None | None | N |
R/H | 0.3493 | ambiguous | 0.4775 | ambiguous | -1.808 | Destabilizing | 1.0 | D | 0.751 | deleterious | N | 0.510312318 | None | None | N |
R/I | 0.8827 | likely_pathogenic | 0.923 | pathogenic | -0.592 | Destabilizing | 1.0 | D | 0.809 | deleterious | None | None | None | None | N |
R/K | 0.3838 | ambiguous | 0.5022 | ambiguous | -1.174 | Destabilizing | 0.998 | D | 0.533 | neutral | None | None | None | None | N |
R/L | 0.7958 | likely_pathogenic | 0.877 | pathogenic | -0.592 | Destabilizing | 1.0 | D | 0.733 | prob.delet. | N | 0.496612302 | None | None | N |
R/M | 0.886 | likely_pathogenic | 0.9303 | pathogenic | -0.947 | Destabilizing | 1.0 | D | 0.798 | deleterious | None | None | None | None | N |
R/N | 0.9779 | likely_pathogenic | 0.9891 | pathogenic | -0.705 | Destabilizing | 1.0 | D | 0.724 | prob.delet. | None | None | None | None | N |
R/P | 0.9982 | likely_pathogenic | 0.999 | pathogenic | -0.872 | Destabilizing | 1.0 | D | 0.781 | deleterious | N | 0.475797832 | None | None | N |
R/Q | 0.3396 | likely_benign | 0.4763 | ambiguous | -0.868 | Destabilizing | 1.0 | D | 0.723 | prob.delet. | None | None | None | None | N |
R/S | 0.9523 | likely_pathogenic | 0.9755 | pathogenic | -1.731 | Destabilizing | 1.0 | D | 0.743 | deleterious | N | 0.450127864 | None | None | N |
R/T | 0.8897 | likely_pathogenic | 0.9352 | pathogenic | -1.376 | Destabilizing | 1.0 | D | 0.73 | prob.delet. | None | None | None | None | N |
R/V | 0.8982 | likely_pathogenic | 0.9338 | pathogenic | -0.872 | Destabilizing | 1.0 | D | 0.786 | deleterious | None | None | None | None | N |
R/W | 0.7158 | likely_pathogenic | 0.7931 | pathogenic | -0.651 | Destabilizing | 1.0 | D | 0.797 | deleterious | None | None | None | None | N |
R/Y | 0.8894 | likely_pathogenic | 0.9297 | pathogenic | -0.439 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.