Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3856 | 11791;11792;11793 | chr2:178741667;178741666;178741665 | chr2:179606394;179606393;179606392 |
N2AB | 3539 | 10840;10841;10842 | chr2:178741667;178741666;178741665 | chr2:179606394;179606393;179606392 |
N2A | None | None | chr2:None | chr2:None |
N2B | 3493 | 10702;10703;10704 | chr2:178741667;178741666;178741665 | chr2:179606394;179606393;179606392 |
Novex-1 | 3618 | 11077;11078;11079 | chr2:178741667;178741666;178741665 | chr2:179606394;179606393;179606392 |
Novex-2 | 3685 | 11278;11279;11280 | chr2:178741667;178741666;178741665 | chr2:179606394;179606393;179606392 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/S | rs765523683 | -0.516 | 0.124 | N | 0.499 | 0.221 | None | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.34E-05 | 1.40292E-04 |
N/S | rs765523683 | -0.516 | 0.124 | N | 0.499 | 0.221 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
N/S | rs765523683 | -0.516 | 0.124 | N | 0.499 | 0.221 | None | gnomAD-4.0.0 | 1.30133E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.6952E-05 | 0 | 1.60102E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.4556 | ambiguous | 0.5372 | ambiguous | -0.762 | Destabilizing | 0.157 | N | 0.585 | neutral | None | None | None | None | I |
N/C | 0.4 | ambiguous | 0.4249 | ambiguous | 0.025 | Stabilizing | 0.968 | D | 0.697 | prob.neutral | None | None | None | None | I |
N/D | 0.1305 | likely_benign | 0.1468 | benign | 0.373 | Stabilizing | None | N | 0.139 | neutral | N | 0.439196406 | None | None | I |
N/E | 0.4525 | ambiguous | 0.6002 | pathogenic | 0.423 | Stabilizing | 0.157 | N | 0.47 | neutral | None | None | None | None | I |
N/F | 0.8477 | likely_pathogenic | 0.8855 | pathogenic | -0.874 | Destabilizing | 0.89 | D | 0.654 | neutral | None | None | None | None | I |
N/G | 0.3306 | likely_benign | 0.3737 | ambiguous | -1.015 | Destabilizing | 0.272 | N | 0.467 | neutral | None | None | None | None | I |
N/H | 0.1116 | likely_benign | 0.1546 | benign | -0.682 | Destabilizing | 0.667 | D | 0.497 | neutral | D | 0.584300893 | None | None | I |
N/I | 0.7526 | likely_pathogenic | 0.8152 | pathogenic | -0.152 | Destabilizing | 0.667 | D | 0.657 | neutral | D | 0.647281027 | None | None | I |
N/K | 0.2582 | likely_benign | 0.3998 | ambiguous | 0.149 | Stabilizing | 0.001 | N | 0.273 | neutral | N | 0.484578806 | None | None | I |
N/L | 0.5169 | ambiguous | 0.6248 | pathogenic | -0.152 | Destabilizing | 0.567 | D | 0.604 | neutral | None | None | None | None | I |
N/M | 0.6655 | likely_pathogenic | 0.7529 | pathogenic | 0.045 | Stabilizing | 0.968 | D | 0.629 | neutral | None | None | None | None | I |
N/P | 0.9464 | likely_pathogenic | 0.9687 | pathogenic | -0.328 | Destabilizing | 0.726 | D | 0.62 | neutral | None | None | None | None | I |
N/Q | 0.3322 | likely_benign | 0.4721 | ambiguous | -0.388 | Destabilizing | 0.396 | N | 0.477 | neutral | None | None | None | None | I |
N/R | 0.264 | likely_benign | 0.3661 | ambiguous | 0.191 | Stabilizing | 0.396 | N | 0.452 | neutral | None | None | None | None | I |
N/S | 0.1038 | likely_benign | 0.1166 | benign | -0.483 | Destabilizing | 0.124 | N | 0.499 | neutral | N | 0.506478203 | None | None | I |
N/T | 0.461 | ambiguous | 0.5376 | ambiguous | -0.24 | Destabilizing | 0.22 | N | 0.474 | neutral | D | 0.607206794 | None | None | I |
N/V | 0.7482 | likely_pathogenic | 0.8172 | pathogenic | -0.328 | Destabilizing | 0.567 | D | 0.654 | neutral | None | None | None | None | I |
N/W | 0.8847 | likely_pathogenic | 0.9156 | pathogenic | -0.699 | Destabilizing | 0.968 | D | 0.691 | prob.neutral | None | None | None | None | I |
N/Y | 0.3126 | likely_benign | 0.3631 | ambiguous | -0.458 | Destabilizing | 0.667 | D | 0.629 | neutral | D | 0.647281027 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.