Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3866 | 11821;11822;11823 | chr2:178741637;178741636;178741635 | chr2:179606364;179606363;179606362 |
N2AB | 3549 | 10870;10871;10872 | chr2:178741637;178741636;178741635 | chr2:179606364;179606363;179606362 |
N2A | None | None | chr2:None | chr2:None |
N2B | 3503 | 10732;10733;10734 | chr2:178741637;178741636;178741635 | chr2:179606364;179606363;179606362 |
Novex-1 | 3628 | 11107;11108;11109 | chr2:178741637;178741636;178741635 | chr2:179606364;179606363;179606362 |
Novex-2 | 3695 | 11308;11309;11310 | chr2:178741637;178741636;178741635 | chr2:179606364;179606363;179606362 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/H | rs777421661 | -1.949 | 0.002 | N | 0.296 | 0.175 | None | gnomAD-2.1.1 | 8.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.11458E-04 | None | 0 | None | 0 | 0 | 0 |
Y/H | rs777421661 | -1.949 | 0.002 | N | 0.296 | 0.175 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.92604E-04 | None | 0 | 0 | 0 | 0 | 0 |
Y/H | rs777421661 | -1.949 | 0.002 | N | 0.296 | 0.175 | None | gnomAD-4.0.0 | 1.85889E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 6.68717E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/A | 0.8134 | likely_pathogenic | 0.6679 | pathogenic | -2.704 | Highly Destabilizing | 0.157 | N | 0.611 | neutral | None | None | None | None | N |
Y/C | 0.1461 | likely_benign | 0.1099 | benign | -1.887 | Destabilizing | 0.001 | N | 0.403 | neutral | D | 0.58001381 | None | None | N |
Y/D | 0.7798 | likely_pathogenic | 0.5693 | pathogenic | -1.957 | Destabilizing | 0.667 | D | 0.737 | prob.delet. | D | 0.548569147 | None | None | N |
Y/E | 0.8926 | likely_pathogenic | 0.7707 | pathogenic | -1.764 | Destabilizing | 0.567 | D | 0.672 | neutral | None | None | None | None | N |
Y/F | 0.1855 | likely_benign | 0.1746 | benign | -0.997 | Destabilizing | 0.364 | N | 0.559 | neutral | N | 0.487846258 | None | None | N |
Y/G | 0.7403 | likely_pathogenic | 0.5911 | pathogenic | -3.129 | Highly Destabilizing | 0.567 | D | 0.681 | prob.neutral | None | None | None | None | N |
Y/H | 0.2866 | likely_benign | 0.1868 | benign | -1.655 | Destabilizing | 0.002 | N | 0.296 | neutral | N | 0.514569717 | None | None | N |
Y/I | 0.7068 | likely_pathogenic | 0.5692 | pathogenic | -1.34 | Destabilizing | 0.567 | D | 0.651 | neutral | None | None | None | None | N |
Y/K | 0.78 | likely_pathogenic | 0.6181 | pathogenic | -1.978 | Destabilizing | 0.567 | D | 0.687 | prob.neutral | None | None | None | None | N |
Y/L | 0.6656 | likely_pathogenic | 0.5554 | ambiguous | -1.34 | Destabilizing | 0.157 | N | 0.574 | neutral | None | None | None | None | N |
Y/M | 0.8109 | likely_pathogenic | 0.7227 | pathogenic | -1.228 | Destabilizing | 0.968 | D | 0.667 | neutral | None | None | None | None | N |
Y/N | 0.4287 | ambiguous | 0.2728 | benign | -2.618 | Highly Destabilizing | 0.497 | N | 0.709 | prob.delet. | D | 0.580159117 | None | None | N |
Y/P | 0.9844 | likely_pathogenic | 0.9628 | pathogenic | -1.802 | Destabilizing | 0.89 | D | 0.771 | deleterious | None | None | None | None | N |
Y/Q | 0.7464 | likely_pathogenic | 0.575 | pathogenic | -2.323 | Highly Destabilizing | 0.726 | D | 0.7 | prob.neutral | None | None | None | None | N |
Y/R | 0.5465 | ambiguous | 0.3868 | ambiguous | -1.808 | Destabilizing | 0.567 | D | 0.719 | prob.delet. | None | None | None | None | N |
Y/S | 0.4869 | ambiguous | 0.3012 | benign | -3.191 | Highly Destabilizing | 0.497 | N | 0.645 | neutral | N | 0.510149362 | None | None | N |
Y/T | 0.7115 | likely_pathogenic | 0.5295 | ambiguous | -2.871 | Highly Destabilizing | 0.567 | D | 0.659 | neutral | None | None | None | None | N |
Y/V | 0.5811 | likely_pathogenic | 0.4626 | ambiguous | -1.802 | Destabilizing | 0.157 | N | 0.597 | neutral | None | None | None | None | N |
Y/W | 0.6179 | likely_pathogenic | 0.5474 | ambiguous | -0.357 | Destabilizing | 0.968 | D | 0.591 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.