Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3906 | 11941;11942;11943 | chr2:178741517;178741516;178741515 | chr2:179606244;179606243;179606242 |
N2AB | 3589 | 10990;10991;10992 | chr2:178741517;178741516;178741515 | chr2:179606244;179606243;179606242 |
N2A | None | None | chr2:None | chr2:None |
N2B | 3543 | 10852;10853;10854 | chr2:178741517;178741516;178741515 | chr2:179606244;179606243;179606242 |
Novex-1 | 3668 | 11227;11228;11229 | chr2:178741517;178741516;178741515 | chr2:179606244;179606243;179606242 |
Novex-2 | 3735 | 11428;11429;11430 | chr2:178741517;178741516;178741515 | chr2:179606244;179606243;179606242 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/C | rs375020177 | -0.029 | None | N | 0.361 | 0.194 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | I | None | 1.23998E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
Y/C | rs375020177 | -0.029 | None | N | 0.361 | 0.194 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
Y/C | rs375020177 | -0.029 | None | N | 0.361 | 0.194 | None | gnomAD-4.0.0 | 4.33767E-06 | None | None | None | None | I | None | 4.00416E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 3.29359E-05 | 1.60092E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/A | 0.5721 | likely_pathogenic | 0.4443 | ambiguous | -1.988 | Destabilizing | 0.016 | N | 0.494 | neutral | None | None | None | None | I |
Y/C | 0.1804 | likely_benign | 0.1366 | benign | -0.559 | Destabilizing | None | N | 0.361 | neutral | N | 0.510178058 | None | None | I |
Y/D | 0.3693 | ambiguous | 0.2711 | benign | -0.366 | Destabilizing | 0.029 | N | 0.63 | neutral | N | 0.498895283 | None | None | I |
Y/E | 0.693 | likely_pathogenic | 0.5709 | pathogenic | -0.311 | Destabilizing | 0.038 | N | 0.583 | neutral | None | None | None | None | I |
Y/F | 0.1137 | likely_benign | 0.1019 | benign | -0.855 | Destabilizing | 0.055 | N | 0.561 | neutral | N | 0.482561214 | None | None | I |
Y/G | 0.6018 | likely_pathogenic | 0.4728 | ambiguous | -2.279 | Highly Destabilizing | 0.038 | N | 0.588 | neutral | None | None | None | None | I |
Y/H | 0.1884 | likely_benign | 0.1452 | benign | -0.697 | Destabilizing | None | N | 0.161 | neutral | N | 0.491910118 | None | None | I |
Y/I | 0.5001 | ambiguous | 0.376 | ambiguous | -1.133 | Destabilizing | 0.002 | N | 0.257 | neutral | None | None | None | None | I |
Y/K | 0.6131 | likely_pathogenic | 0.487 | ambiguous | -0.81 | Destabilizing | 0.038 | N | 0.62 | neutral | None | None | None | None | I |
Y/L | 0.5158 | ambiguous | 0.3961 | ambiguous | -1.133 | Destabilizing | 0.016 | N | 0.519 | neutral | None | None | None | None | I |
Y/M | 0.6835 | likely_pathogenic | 0.577 | pathogenic | -0.733 | Destabilizing | 0.356 | N | 0.622 | neutral | None | None | None | None | I |
Y/N | 0.207 | likely_benign | 0.1512 | benign | -1.04 | Destabilizing | 0.029 | N | 0.626 | neutral | N | 0.488595349 | None | None | I |
Y/P | 0.9022 | likely_pathogenic | 0.8291 | pathogenic | -1.409 | Destabilizing | 0.214 | N | 0.616 | neutral | None | None | None | None | I |
Y/Q | 0.5503 | ambiguous | 0.4159 | ambiguous | -1.013 | Destabilizing | 0.002 | N | 0.258 | neutral | None | None | None | None | I |
Y/R | 0.4186 | ambiguous | 0.3129 | benign | -0.328 | Destabilizing | 0.12 | N | 0.617 | neutral | None | None | None | None | I |
Y/S | 0.2123 | likely_benign | 0.1574 | benign | -1.568 | Destabilizing | None | N | 0.356 | neutral | N | 0.467829584 | None | None | I |
Y/T | 0.4247 | ambiguous | 0.3163 | benign | -1.425 | Destabilizing | 0.038 | N | 0.581 | neutral | None | None | None | None | I |
Y/V | 0.4189 | ambiguous | 0.315 | benign | -1.409 | Destabilizing | 0.038 | N | 0.549 | neutral | None | None | None | None | I |
Y/W | 0.4684 | ambiguous | 0.4275 | ambiguous | -0.533 | Destabilizing | 0.864 | D | 0.601 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.