Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3999 | 12220;12221;12222 | chr2:178741238;178741237;178741236 | chr2:179605965;179605964;179605963 |
N2AB | 3682 | 11269;11270;11271 | chr2:178741238;178741237;178741236 | chr2:179605965;179605964;179605963 |
N2A | None | None | chr2:None | chr2:None |
N2B | 3636 | 11131;11132;11133 | chr2:178741238;178741237;178741236 | chr2:179605965;179605964;179605963 |
Novex-1 | 3761 | 11506;11507;11508 | chr2:178741238;178741237;178741236 | chr2:179605965;179605964;179605963 |
Novex-2 | 3828 | 11707;11708;11709 | chr2:178741238;178741237;178741236 | chr2:179605965;179605964;179605963 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/S | rs199844346 | -0.404 | 0.023 | N | 0.105 | 0.067 | None | gnomAD-2.1.1 | 1.39462E-04 | None | None | None | None | I | None | 0 | 1.41499E-04 | None | 3.87072E-04 | 0 | None | 0 | None | 0 | 2.34716E-04 | 0 |
N/S | rs199844346 | -0.404 | 0.023 | N | 0.105 | 0.067 | None | gnomAD-3.1.2 | 9.86E-05 | None | None | None | None | I | None | 0 | 2.61883E-04 | 0 | 2.88184E-04 | 0 | None | 0 | 0 | 1.32322E-04 | 0 | 4.78011E-04 |
N/S | rs199844346 | -0.404 | 0.023 | N | 0.105 | 0.067 | None | gnomAD-4.0.0 | 7.8086E-05 | None | None | None | None | I | None | 0 | 1.83315E-04 | None | 4.39189E-04 | 0 | None | 0 | 1.15512E-03 | 6.7807E-05 | 0 | 2.40085E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.5661 | likely_pathogenic | 0.5373 | ambiguous | -0.744 | Destabilizing | 0.329 | N | 0.378 | neutral | None | None | None | None | I |
N/C | 0.5045 | ambiguous | 0.4838 | ambiguous | 0.015 | Stabilizing | 0.995 | D | 0.425 | neutral | None | None | None | None | I |
N/D | 0.4814 | ambiguous | 0.4692 | ambiguous | -0.817 | Destabilizing | 0.425 | N | 0.227 | neutral | N | 0.485414526 | None | None | I |
N/E | 0.7377 | likely_pathogenic | 0.7305 | pathogenic | -0.7 | Destabilizing | 0.329 | N | 0.214 | neutral | None | None | None | None | I |
N/F | 0.8275 | likely_pathogenic | 0.8082 | pathogenic | -0.441 | Destabilizing | 0.944 | D | 0.441 | neutral | None | None | None | None | I |
N/G | 0.6261 | likely_pathogenic | 0.5937 | pathogenic | -1.105 | Destabilizing | 0.495 | N | 0.237 | neutral | None | None | None | None | I |
N/H | 0.22 | likely_benign | 0.2277 | benign | -0.941 | Destabilizing | 0.013 | N | 0.174 | neutral | N | 0.498357913 | None | None | I |
N/I | 0.4816 | ambiguous | 0.4647 | ambiguous | 0.18 | Stabilizing | 0.927 | D | 0.443 | neutral | N | 0.51125321 | None | None | I |
N/K | 0.5617 | ambiguous | 0.5999 | pathogenic | -0.319 | Destabilizing | 0.023 | N | 0.101 | neutral | N | 0.481511927 | None | None | I |
N/L | 0.4572 | ambiguous | 0.4481 | ambiguous | 0.18 | Stabilizing | 0.704 | D | 0.471 | neutral | None | None | None | None | I |
N/M | 0.6142 | likely_pathogenic | 0.5939 | pathogenic | 0.608 | Stabilizing | 0.944 | D | 0.413 | neutral | None | None | None | None | I |
N/P | 0.8541 | likely_pathogenic | 0.8568 | pathogenic | -0.097 | Destabilizing | 0.828 | D | 0.442 | neutral | None | None | None | None | I |
N/Q | 0.649 | likely_pathogenic | 0.6519 | pathogenic | -0.898 | Destabilizing | 0.013 | N | 0.086 | neutral | None | None | None | None | I |
N/R | 0.5632 | ambiguous | 0.5907 | pathogenic | -0.45 | Destabilizing | 0.007 | N | 0.141 | neutral | None | None | None | None | I |
N/S | 0.1535 | likely_benign | 0.1478 | benign | -0.939 | Destabilizing | 0.023 | N | 0.105 | neutral | N | 0.469822092 | None | None | I |
N/T | 0.3237 | likely_benign | 0.3164 | benign | -0.635 | Destabilizing | 0.27 | N | 0.179 | neutral | N | 0.493384545 | None | None | I |
N/V | 0.5318 | ambiguous | 0.5166 | ambiguous | -0.097 | Destabilizing | 0.828 | D | 0.463 | neutral | None | None | None | None | I |
N/W | 0.9148 | likely_pathogenic | 0.8994 | pathogenic | -0.258 | Destabilizing | 0.995 | D | 0.453 | neutral | None | None | None | None | I |
N/Y | 0.3288 | likely_benign | 0.3256 | benign | -0.016 | Destabilizing | 0.863 | D | 0.429 | neutral | N | 0.50917363 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.