Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4704 | 14335;14336;14337 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
N2AB | 4387 | 13384;13385;13386 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
N2A | 3460 | 10603;10604;10605 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
N2B | 4341 | 13246;13247;13248 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
Novex-1 | 4466 | 13621;13622;13623 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
Novex-2 | 4533 | 13822;13823;13824 | chr2:178738343;178738342;178738341 | chr2:179603070;179603069;179603068 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs775443847 | -0.111 | 0.055 | N | 0.425 | 0.24 | 0.420447328233 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.29E-05 | None | 0 | 0 | 0 |
R/G | rs775443847 | -0.111 | 0.055 | N | 0.425 | 0.24 | 0.420447328233 | gnomAD-4.0.0 | 1.59525E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43538E-05 | 0 |
R/K | None | None | None | N | 0.127 | 0.123 | 0.236278675362 | gnomAD-4.0.0 | 1.59526E-06 | None | None | None | None | N | None | 5.66316E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3916 | ambiguous | 0.452 | ambiguous | -0.578 | Destabilizing | 0.016 | N | 0.339 | neutral | None | None | None | None | N |
R/C | 0.2492 | likely_benign | 0.2981 | benign | -0.489 | Destabilizing | 0.864 | D | 0.319 | neutral | None | None | None | None | N |
R/D | 0.6469 | likely_pathogenic | 0.6987 | pathogenic | 0.017 | Stabilizing | 0.072 | N | 0.449 | neutral | None | None | None | None | N |
R/E | 0.2779 | likely_benign | 0.3396 | benign | 0.148 | Stabilizing | 0.016 | N | 0.275 | neutral | None | None | None | None | N |
R/F | 0.6116 | likely_pathogenic | 0.6854 | pathogenic | -0.342 | Destabilizing | 0.214 | N | 0.367 | neutral | None | None | None | None | N |
R/G | 0.2213 | likely_benign | 0.2734 | benign | -0.902 | Destabilizing | 0.055 | N | 0.425 | neutral | N | 0.51177777 | None | None | N |
R/H | 0.1156 | likely_benign | 0.124 | benign | -1.285 | Destabilizing | 0.356 | N | 0.285 | neutral | None | None | None | None | N |
R/I | 0.3086 | likely_benign | 0.3678 | ambiguous | 0.29 | Stabilizing | 0.038 | N | 0.434 | neutral | None | None | None | None | N |
R/K | 0.0765 | likely_benign | 0.0785 | benign | -0.631 | Destabilizing | None | N | 0.127 | neutral | N | 0.413419261 | None | None | N |
R/L | 0.2868 | likely_benign | 0.3359 | benign | 0.29 | Stabilizing | None | N | 0.203 | neutral | None | None | None | None | N |
R/M | 0.2509 | likely_benign | 0.2889 | benign | -0.113 | Destabilizing | 0.171 | N | 0.329 | neutral | N | 0.515083035 | None | None | N |
R/N | 0.4619 | ambiguous | 0.4948 | ambiguous | -0.12 | Destabilizing | 0.072 | N | 0.263 | neutral | None | None | None | None | N |
R/P | 0.9019 | likely_pathogenic | 0.9206 | pathogenic | 0.022 | Stabilizing | 0.356 | N | 0.421 | neutral | None | None | None | None | N |
R/Q | 0.0906 | likely_benign | 0.1042 | benign | -0.23 | Destabilizing | 0.001 | N | 0.123 | neutral | None | None | None | None | N |
R/S | 0.4126 | ambiguous | 0.4724 | ambiguous | -0.799 | Destabilizing | 0.012 | N | 0.341 | neutral | N | 0.439047328 | None | None | N |
R/T | 0.2119 | likely_benign | 0.241 | benign | -0.483 | Destabilizing | 0.055 | N | 0.397 | neutral | N | 0.480378183 | None | None | N |
R/V | 0.3681 | ambiguous | 0.4247 | ambiguous | 0.022 | Stabilizing | 0.038 | N | 0.449 | neutral | None | None | None | None | N |
R/W | 0.195 | likely_benign | 0.2267 | benign | -0.041 | Destabilizing | 0.828 | D | 0.313 | neutral | D | 0.598822925 | None | None | N |
R/Y | 0.3974 | ambiguous | 0.4688 | ambiguous | 0.251 | Stabilizing | 0.628 | D | 0.388 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.