Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4727 | 14404;14405;14406 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
N2AB | 4410 | 13453;13454;13455 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
N2A | 3483 | 10672;10673;10674 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
N2B | 4364 | 13315;13316;13317 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
Novex-1 | 4489 | 13690;13691;13692 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
Novex-2 | 4556 | 13891;13892;13893 | chr2:178738274;178738273;178738272 | chr2:179603001;179603000;179602999 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/S | rs1212488962 | -0.207 | 1.0 | N | 0.747 | 0.693 | 0.488477830397 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
P/S | rs1212488962 | -0.207 | 1.0 | N | 0.747 | 0.693 | 0.488477830397 | gnomAD-4.0.0 | 2.60045E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.05841E-05 | 0 | 6.6291E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.2032 | likely_benign | 0.414 | ambiguous | -1.201 | Destabilizing | 1.0 | D | 0.71 | prob.delet. | N | 0.499490525 | None | None | I |
P/C | 0.8379 | likely_pathogenic | 0.9479 | pathogenic | -0.6 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | I |
P/D | 0.6536 | likely_pathogenic | 0.8735 | pathogenic | -1.137 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | I |
P/E | 0.4551 | ambiguous | 0.7266 | pathogenic | -1.161 | Destabilizing | 1.0 | D | 0.743 | deleterious | None | None | None | None | I |
P/F | 0.8532 | likely_pathogenic | 0.9639 | pathogenic | -1.019 | Destabilizing | 1.0 | D | 0.718 | prob.delet. | None | None | None | None | I |
P/G | 0.5856 | likely_pathogenic | 0.8061 | pathogenic | -1.47 | Destabilizing | 1.0 | D | 0.718 | prob.delet. | None | None | None | None | I |
P/H | 0.4459 | ambiguous | 0.7304 | pathogenic | -1.034 | Destabilizing | 1.0 | D | 0.686 | prob.neutral | N | 0.505501582 | None | None | I |
P/I | 0.7207 | likely_pathogenic | 0.8948 | pathogenic | -0.574 | Destabilizing | 1.0 | D | 0.731 | prob.delet. | None | None | None | None | I |
P/K | 0.5083 | ambiguous | 0.7573 | pathogenic | -1.003 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | I |
P/L | 0.3435 | ambiguous | 0.6112 | pathogenic | -0.574 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | N | 0.505501582 | None | None | I |
P/M | 0.715 | likely_pathogenic | 0.8959 | pathogenic | -0.426 | Destabilizing | 1.0 | D | 0.682 | prob.neutral | None | None | None | None | I |
P/N | 0.6404 | likely_pathogenic | 0.8639 | pathogenic | -0.7 | Destabilizing | 1.0 | D | 0.72 | prob.delet. | None | None | None | None | I |
P/Q | 0.3404 | ambiguous | 0.6381 | pathogenic | -0.89 | Destabilizing | 1.0 | D | 0.758 | deleterious | None | None | None | None | I |
P/R | 0.336 | likely_benign | 0.6176 | pathogenic | -0.474 | Destabilizing | 1.0 | D | 0.719 | prob.delet. | N | 0.499806253 | None | None | I |
P/S | 0.2791 | likely_benign | 0.5563 | ambiguous | -1.104 | Destabilizing | 1.0 | D | 0.747 | deleterious | N | 0.498921175 | None | None | I |
P/T | 0.2903 | likely_benign | 0.5363 | ambiguous | -1.025 | Destabilizing | 1.0 | D | 0.741 | deleterious | N | 0.499806253 | None | None | I |
P/V | 0.5611 | ambiguous | 0.7826 | pathogenic | -0.749 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | I |
P/W | 0.8882 | likely_pathogenic | 0.9716 | pathogenic | -1.199 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | I |
P/Y | 0.8045 | likely_pathogenic | 0.9435 | pathogenic | -0.907 | Destabilizing | 1.0 | D | 0.734 | prob.delet. | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.