Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4857 | 14794;14795;14796 | chr2:178735877;178735876;178735875 | chr2:179600604;179600603;179600602 |
N2AB | 4540 | 13843;13844;13845 | chr2:178735877;178735876;178735875 | chr2:179600604;179600603;179600602 |
N2A | 3613 | 11062;11063;11064 | chr2:178735877;178735876;178735875 | chr2:179600604;179600603;179600602 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 0.999 | N | 0.782 | 0.368 | 0.707450365078 | gnomAD-4.0.0 | 2.05257E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.69833E-06 | 0 | 0 |
L/I | None | None | 0.992 | N | 0.562 | 0.269 | 0.555908562551 | gnomAD-4.0.0 | 1.36838E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79889E-06 | 0 | 0 |
L/R | rs1267218460 | -1.496 | 1.0 | N | 0.782 | 0.744 | 0.858254026184 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.87E-06 | 0 |
L/R | rs1267218460 | -1.496 | 1.0 | N | 0.782 | 0.744 | 0.858254026184 | gnomAD-4.0.0 | 3.18227E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 2.41313E-04 | 2.85794E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.5653 | likely_pathogenic | 0.4495 | ambiguous | -2.21 | Highly Destabilizing | 0.997 | D | 0.617 | neutral | None | None | None | None | N |
L/C | 0.6763 | likely_pathogenic | 0.603 | pathogenic | -2.017 | Highly Destabilizing | 1.0 | D | 0.735 | prob.delet. | None | None | None | None | N |
L/D | 0.9774 | likely_pathogenic | 0.9669 | pathogenic | -2.05 | Highly Destabilizing | 1.0 | D | 0.785 | deleterious | None | None | None | None | N |
L/E | 0.902 | likely_pathogenic | 0.8623 | pathogenic | -1.97 | Destabilizing | 1.0 | D | 0.773 | deleterious | None | None | None | None | N |
L/F | 0.5299 | ambiguous | 0.427 | ambiguous | -1.642 | Destabilizing | 0.999 | D | 0.782 | deleterious | N | 0.512938934 | None | None | N |
L/G | 0.8655 | likely_pathogenic | 0.8079 | pathogenic | -2.596 | Highly Destabilizing | 1.0 | D | 0.77 | deleterious | None | None | None | None | N |
L/H | 0.8173 | likely_pathogenic | 0.7528 | pathogenic | -1.78 | Destabilizing | 1.0 | D | 0.739 | prob.delet. | D | 0.613288247 | None | None | N |
L/I | 0.1159 | likely_benign | 0.094 | benign | -1.167 | Destabilizing | 0.992 | D | 0.562 | neutral | N | 0.457026083 | None | None | N |
L/K | 0.8767 | likely_pathogenic | 0.8469 | pathogenic | -1.53 | Destabilizing | 1.0 | D | 0.766 | deleterious | None | None | None | None | N |
L/M | 0.2062 | likely_benign | 0.1721 | benign | -1.209 | Destabilizing | 1.0 | D | 0.765 | deleterious | None | None | None | None | N |
L/N | 0.8201 | likely_pathogenic | 0.7722 | pathogenic | -1.572 | Destabilizing | 1.0 | D | 0.781 | deleterious | None | None | None | None | N |
L/P | 0.7567 | likely_pathogenic | 0.7252 | pathogenic | -1.49 | Destabilizing | 1.0 | D | 0.777 | deleterious | N | 0.510788487 | None | None | N |
L/Q | 0.6979 | likely_pathogenic | 0.6243 | pathogenic | -1.707 | Destabilizing | 1.0 | D | 0.777 | deleterious | None | None | None | None | N |
L/R | 0.787 | likely_pathogenic | 0.7376 | pathogenic | -1.029 | Destabilizing | 1.0 | D | 0.782 | deleterious | N | 0.513961416 | None | None | N |
L/S | 0.7441 | likely_pathogenic | 0.6272 | pathogenic | -2.307 | Highly Destabilizing | 1.0 | D | 0.771 | deleterious | None | None | None | None | N |
L/T | 0.4724 | ambiguous | 0.3685 | ambiguous | -2.1 | Highly Destabilizing | 0.999 | D | 0.741 | deleterious | None | None | None | None | N |
L/V | 0.1205 | likely_benign | 0.094 | benign | -1.49 | Destabilizing | 0.767 | D | 0.395 | neutral | N | 0.37668368 | None | None | N |
L/W | 0.8519 | likely_pathogenic | 0.7968 | pathogenic | -1.732 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | N |
L/Y | 0.874 | likely_pathogenic | 0.8257 | pathogenic | -1.484 | Destabilizing | 1.0 | D | 0.793 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.