Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5282 | 16069;16070;16071 | chr2:178733449;178733448;178733447 | chr2:179598176;179598175;179598174 |
N2AB | 4965 | 15118;15119;15120 | chr2:178733449;178733448;178733447 | chr2:179598176;179598175;179598174 |
N2A | 4038 | 12337;12338;12339 | chr2:178733449;178733448;178733447 | chr2:179598176;179598175;179598174 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/C | rs1253364524 | None | 0.002 | N | 0.514 | 0.26 | 0.0611884634855 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
Y/C | rs1253364524 | None | 0.002 | N | 0.514 | 0.26 | 0.0611884634855 | gnomAD-4.0.0 | 6.40494E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.19649E-05 | 0 | 0 |
Y/D | rs1438275064 | -3.303 | 0.81 | N | 0.81 | 0.423 | 0.500868654924 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
Y/D | rs1438275064 | -3.303 | 0.81 | N | 0.81 | 0.423 | 0.500868654924 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
Y/D | rs1438275064 | -3.303 | 0.81 | N | 0.81 | 0.423 | 0.500868654924 | gnomAD-4.0.0 | 2.56281E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.78657E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/A | 0.7925 | likely_pathogenic | 0.8485 | pathogenic | -2.802 | Highly Destabilizing | 0.25 | N | 0.712 | prob.delet. | None | None | None | None | N |
Y/C | 0.1564 | likely_benign | 0.1834 | benign | -1.639 | Destabilizing | 0.002 | N | 0.514 | neutral | N | 0.13592792 | None | None | N |
Y/D | 0.9105 | likely_pathogenic | 0.9386 | pathogenic | -3.431 | Highly Destabilizing | 0.81 | D | 0.81 | deleterious | N | 0.414715052 | None | None | N |
Y/E | 0.9711 | likely_pathogenic | 0.9824 | pathogenic | -3.206 | Highly Destabilizing | 0.617 | D | 0.795 | deleterious | None | None | None | None | N |
Y/F | 0.1241 | likely_benign | 0.1417 | benign | -1.027 | Destabilizing | 0.712 | D | 0.636 | neutral | N | 0.375428129 | None | None | N |
Y/G | 0.7354 | likely_pathogenic | 0.759 | pathogenic | -3.229 | Highly Destabilizing | 0.617 | D | 0.791 | deleterious | None | None | None | None | N |
Y/H | 0.7497 | likely_pathogenic | 0.8264 | pathogenic | -2.033 | Highly Destabilizing | 0.963 | D | 0.638 | neutral | N | 0.414715052 | None | None | N |
Y/I | 0.6062 | likely_pathogenic | 0.6936 | pathogenic | -1.381 | Destabilizing | 0.617 | D | 0.751 | deleterious | None | None | None | None | N |
Y/K | 0.9721 | likely_pathogenic | 0.9806 | pathogenic | -2.218 | Highly Destabilizing | 0.617 | D | 0.78 | deleterious | None | None | None | None | N |
Y/L | 0.6034 | likely_pathogenic | 0.6501 | pathogenic | -1.381 | Destabilizing | 0.25 | N | 0.703 | prob.neutral | None | None | None | None | N |
Y/M | 0.7072 | likely_pathogenic | 0.7726 | pathogenic | -1.14 | Destabilizing | 0.972 | D | 0.766 | deleterious | None | None | None | None | N |
Y/N | 0.6599 | likely_pathogenic | 0.7339 | pathogenic | -3.13 | Highly Destabilizing | 0.81 | D | 0.795 | deleterious | N | 0.414715052 | None | None | N |
Y/P | 0.9905 | likely_pathogenic | 0.9931 | pathogenic | -1.871 | Destabilizing | 0.92 | D | 0.82 | deleterious | None | None | None | None | N |
Y/Q | 0.9519 | likely_pathogenic | 0.9715 | pathogenic | -2.803 | Highly Destabilizing | 0.92 | D | 0.774 | deleterious | None | None | None | None | N |
Y/R | 0.9529 | likely_pathogenic | 0.9697 | pathogenic | -2.167 | Highly Destabilizing | 0.92 | D | 0.799 | deleterious | None | None | None | None | N |
Y/S | 0.692 | likely_pathogenic | 0.7616 | pathogenic | -3.42 | Highly Destabilizing | 0.045 | N | 0.589 | neutral | N | 0.340059385 | None | None | N |
Y/T | 0.8118 | likely_pathogenic | 0.8562 | pathogenic | -3.065 | Highly Destabilizing | 0.447 | N | 0.764 | deleterious | None | None | None | None | N |
Y/V | 0.4597 | ambiguous | 0.5337 | ambiguous | -1.871 | Destabilizing | 0.447 | N | 0.711 | prob.delet. | None | None | None | None | N |
Y/W | 0.7508 | likely_pathogenic | 0.8092 | pathogenic | -0.365 | Destabilizing | 0.992 | D | 0.657 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.