Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5419 | 16480;16481;16482 | chr2:178732921;178732920;178732919 | chr2:179597648;179597647;179597646 |
N2AB | 5102 | 15529;15530;15531 | chr2:178732921;178732920;178732919 | chr2:179597648;179597647;179597646 |
N2A | 4175 | 12748;12749;12750 | chr2:178732921;178732920;178732919 | chr2:179597648;179597647;179597646 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs1352050140 | -2.386 | 0.334 | N | 0.501 | 0.302 | 0.587751488883 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.92E-06 | 0 |
V/A | rs1352050140 | -2.386 | 0.334 | N | 0.501 | 0.302 | 0.587751488883 | gnomAD-4.0.0 | 1.59198E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85873E-06 | 0 | 0 |
V/I | None | None | 0.004 | N | 0.243 | 0.126 | 0.452928561435 | gnomAD-4.0.0 | 2.053E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79902E-06 | 1.15945E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1606 | likely_benign | 0.1776 | benign | -1.861 | Destabilizing | 0.334 | N | 0.501 | neutral | N | 0.464181036 | None | None | N |
V/C | 0.774 | likely_pathogenic | 0.7739 | pathogenic | -1.931 | Destabilizing | 0.992 | D | 0.601 | neutral | None | None | None | None | N |
V/D | 0.7778 | likely_pathogenic | 0.7818 | pathogenic | -2.621 | Highly Destabilizing | 0.972 | D | 0.677 | prob.neutral | None | None | None | None | N |
V/E | 0.6899 | likely_pathogenic | 0.7044 | pathogenic | -2.565 | Highly Destabilizing | 0.963 | D | 0.625 | neutral | D | 0.522837389 | None | None | N |
V/F | 0.3906 | ambiguous | 0.4097 | ambiguous | -1.45 | Destabilizing | 0.85 | D | 0.624 | neutral | None | None | None | None | N |
V/G | 0.2755 | likely_benign | 0.302 | benign | -2.211 | Highly Destabilizing | 0.896 | D | 0.657 | neutral | D | 0.534193694 | None | None | N |
V/H | 0.8849 | likely_pathogenic | 0.8933 | pathogenic | -1.613 | Destabilizing | 0.992 | D | 0.637 | neutral | None | None | None | None | N |
V/I | 0.0905 | likely_benign | 0.0866 | benign | -0.951 | Destabilizing | 0.004 | N | 0.243 | neutral | N | 0.508414603 | None | None | N |
V/K | 0.8034 | likely_pathogenic | 0.8103 | pathogenic | -1.571 | Destabilizing | 0.92 | D | 0.625 | neutral | None | None | None | None | N |
V/L | 0.1732 | likely_benign | 0.1838 | benign | -0.951 | Destabilizing | 0.001 | N | 0.201 | neutral | N | 0.469090997 | None | None | N |
V/M | 0.1652 | likely_benign | 0.1813 | benign | -1.011 | Destabilizing | 0.85 | D | 0.593 | neutral | None | None | None | None | N |
V/N | 0.5642 | likely_pathogenic | 0.5734 | pathogenic | -1.674 | Destabilizing | 0.972 | D | 0.669 | neutral | None | None | None | None | N |
V/P | 0.6272 | likely_pathogenic | 0.6422 | pathogenic | -1.226 | Destabilizing | 0.972 | D | 0.64 | neutral | None | None | None | None | N |
V/Q | 0.7017 | likely_pathogenic | 0.7086 | pathogenic | -1.844 | Destabilizing | 0.972 | D | 0.634 | neutral | None | None | None | None | N |
V/R | 0.7395 | likely_pathogenic | 0.7484 | pathogenic | -1.074 | Destabilizing | 0.92 | D | 0.671 | neutral | None | None | None | None | N |
V/S | 0.3344 | likely_benign | 0.354 | ambiguous | -2.198 | Highly Destabilizing | 0.92 | D | 0.611 | neutral | None | None | None | None | N |
V/T | 0.175 | likely_benign | 0.1928 | benign | -2.03 | Highly Destabilizing | 0.617 | D | 0.555 | neutral | None | None | None | None | N |
V/W | 0.9272 | likely_pathogenic | 0.9356 | pathogenic | -1.674 | Destabilizing | 0.992 | D | 0.648 | neutral | None | None | None | None | N |
V/Y | 0.8484 | likely_pathogenic | 0.8591 | pathogenic | -1.373 | Destabilizing | 0.92 | D | 0.655 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.