Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5460 | 16603;16604;16605 | chr2:178732683;178732682;178732681 | chr2:179597410;179597409;179597408 |
N2AB | 5143 | 15652;15653;15654 | chr2:178732683;178732682;178732681 | chr2:179597410;179597409;179597408 |
N2A | 4216 | 12871;12872;12873 | chr2:178732683;178732682;178732681 | chr2:179597410;179597409;179597408 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/G | None | None | 0.477 | N | 0.497 | 0.314 | 0.289474373501 | gnomAD-4.0.0 | 1.62005E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.9025E-06 | 0 | 0 |
D/N | rs771075704 | -0.023 | 0.864 | N | 0.513 | 0.289 | 0.331619326243 | gnomAD-2.1.1 | 4.2E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.19E-06 | 0 |
D/N | rs771075704 | -0.023 | 0.864 | N | 0.513 | 0.289 | 0.331619326243 | gnomAD-4.0.0 | 1.62156E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.905E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1325 | likely_benign | 0.1504 | benign | -0.274 | Destabilizing | 0.006 | N | 0.329 | neutral | N | 0.446419208 | None | None | I |
D/C | 0.6259 | likely_pathogenic | 0.6902 | pathogenic | -0.194 | Destabilizing | 0.985 | D | 0.684 | prob.neutral | None | None | None | None | I |
D/E | 0.1152 | likely_benign | 0.1278 | benign | -0.278 | Destabilizing | 0.006 | N | 0.168 | neutral | N | 0.375191041 | None | None | I |
D/F | 0.506 | ambiguous | 0.5628 | ambiguous | 0.289 | Stabilizing | 0.945 | D | 0.673 | neutral | None | None | None | None | I |
D/G | 0.1858 | likely_benign | 0.2204 | benign | -0.57 | Destabilizing | 0.477 | N | 0.497 | neutral | N | 0.517570017 | None | None | I |
D/H | 0.2611 | likely_benign | 0.2988 | benign | 0.423 | Stabilizing | 0.98 | D | 0.524 | neutral | N | 0.466834552 | None | None | I |
D/I | 0.2478 | likely_benign | 0.2866 | benign | 0.49 | Stabilizing | 0.894 | D | 0.667 | neutral | None | None | None | None | I |
D/K | 0.3244 | likely_benign | 0.3786 | ambiguous | 0.211 | Stabilizing | 0.547 | D | 0.505 | neutral | None | None | None | None | I |
D/L | 0.3001 | likely_benign | 0.3417 | ambiguous | 0.49 | Stabilizing | 0.809 | D | 0.643 | neutral | None | None | None | None | I |
D/M | 0.4518 | ambiguous | 0.5094 | ambiguous | 0.531 | Stabilizing | 0.985 | D | 0.646 | neutral | None | None | None | None | I |
D/N | 0.1031 | likely_benign | 0.1151 | benign | -0.435 | Destabilizing | 0.864 | D | 0.513 | neutral | N | 0.438397157 | None | None | I |
D/P | 0.6201 | likely_pathogenic | 0.6778 | pathogenic | 0.26 | Stabilizing | 0.945 | D | 0.55 | neutral | None | None | None | None | I |
D/Q | 0.2686 | likely_benign | 0.3042 | benign | -0.305 | Destabilizing | 0.809 | D | 0.523 | neutral | None | None | None | None | I |
D/R | 0.3637 | ambiguous | 0.4142 | ambiguous | 0.521 | Stabilizing | 0.894 | D | 0.64 | neutral | None | None | None | None | I |
D/S | 0.1351 | likely_benign | 0.1506 | benign | -0.571 | Destabilizing | 0.547 | D | 0.491 | neutral | None | None | None | None | I |
D/T | 0.1811 | likely_benign | 0.2073 | benign | -0.314 | Destabilizing | 0.894 | D | 0.5 | neutral | None | None | None | None | I |
D/V | 0.1311 | likely_benign | 0.1463 | benign | 0.26 | Stabilizing | 0.761 | D | 0.597 | neutral | N | 0.429852245 | None | None | I |
D/W | 0.8192 | likely_pathogenic | 0.8512 | pathogenic | 0.542 | Stabilizing | 0.995 | D | 0.691 | prob.neutral | None | None | None | None | I |
D/Y | 0.177 | likely_benign | 0.1981 | benign | 0.568 | Stabilizing | 0.993 | D | 0.67 | neutral | N | 0.482900083 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.