Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5492 | 16699;16700;16701 | chr2:178732587;178732586;178732585 | chr2:179597314;179597313;179597312 |
N2AB | 5175 | 15748;15749;15750 | chr2:178732587;178732586;178732585 | chr2:179597314;179597313;179597312 |
N2A | 4248 | 12967;12968;12969 | chr2:178732587;178732586;178732585 | chr2:179597314;179597313;179597312 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/F | rs1162269961 | None | 0.984 | N | 0.569 | 0.495 | 0.752771577926 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 1.92976E-04 | None | 0 | 0 | 0 | 0 | 0 |
S/F | rs1162269961 | None | 0.984 | N | 0.569 | 0.495 | 0.752771577926 | gnomAD-4.0.0 | 2.56274E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.4273E-05 | None | 0 | 0 | 0 | 1.34005E-05 | 0 |
S/P | None | None | 0.984 | N | 0.428 | 0.345 | 0.346544149963 | gnomAD-4.0.0 | 2.40064E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.625E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.0818 | likely_benign | 0.0924 | benign | -0.336 | Destabilizing | 0.64 | D | 0.341 | neutral | N | 0.51641801 | None | None | I |
S/C | 0.1666 | likely_benign | 0.2021 | benign | -0.368 | Destabilizing | 0.999 | D | 0.475 | neutral | N | 0.521072508 | None | None | I |
S/D | 0.4466 | ambiguous | 0.6083 | pathogenic | 0.512 | Stabilizing | 0.919 | D | 0.305 | neutral | None | None | None | None | I |
S/E | 0.5103 | ambiguous | 0.667 | pathogenic | 0.431 | Stabilizing | 0.919 | D | 0.317 | neutral | None | None | None | None | I |
S/F | 0.255 | likely_benign | 0.3901 | ambiguous | -0.916 | Destabilizing | 0.984 | D | 0.569 | neutral | N | 0.498359897 | None | None | I |
S/G | 0.1104 | likely_benign | 0.1295 | benign | -0.445 | Destabilizing | 0.919 | D | 0.327 | neutral | None | None | None | None | I |
S/H | 0.4256 | ambiguous | 0.5526 | ambiguous | -0.768 | Destabilizing | 0.999 | D | 0.457 | neutral | None | None | None | None | I |
S/I | 0.2225 | likely_benign | 0.3334 | benign | -0.182 | Destabilizing | 0.976 | D | 0.556 | neutral | None | None | None | None | I |
S/K | 0.6582 | likely_pathogenic | 0.8175 | pathogenic | -0.321 | Destabilizing | 0.919 | D | 0.307 | neutral | None | None | None | None | I |
S/L | 0.1039 | likely_benign | 0.1401 | benign | -0.182 | Destabilizing | 0.851 | D | 0.443 | neutral | None | None | None | None | I |
S/M | 0.2257 | likely_benign | 0.2823 | benign | -0.188 | Destabilizing | 0.999 | D | 0.448 | neutral | None | None | None | None | I |
S/N | 0.1929 | likely_benign | 0.2535 | benign | -0.117 | Destabilizing | 0.919 | D | 0.355 | neutral | None | None | None | None | I |
S/P | 0.0804 | likely_benign | 0.0845 | benign | -0.205 | Destabilizing | 0.984 | D | 0.428 | neutral | N | 0.459583293 | None | None | I |
S/Q | 0.526 | ambiguous | 0.6337 | pathogenic | -0.29 | Destabilizing | 0.988 | D | 0.355 | neutral | None | None | None | None | I |
S/R | 0.5722 | likely_pathogenic | 0.7551 | pathogenic | -0.132 | Destabilizing | 0.976 | D | 0.432 | neutral | None | None | None | None | I |
S/T | 0.078 | likely_benign | 0.0982 | benign | -0.248 | Destabilizing | 0.046 | N | 0.171 | neutral | N | 0.510396115 | None | None | I |
S/V | 0.2239 | likely_benign | 0.3125 | benign | -0.205 | Destabilizing | 0.851 | D | 0.441 | neutral | None | None | None | None | I |
S/W | 0.3257 | likely_benign | 0.4596 | ambiguous | -0.946 | Destabilizing | 0.999 | D | 0.639 | neutral | None | None | None | None | I |
S/Y | 0.2152 | likely_benign | 0.33 | benign | -0.643 | Destabilizing | 0.995 | D | 0.563 | neutral | N | 0.487737607 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.