Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5496 | 16711;16712;16713 | chr2:178732575;178732574;178732573 | chr2:179597302;179597301;179597300 |
N2AB | 5179 | 15760;15761;15762 | chr2:178732575;178732574;178732573 | chr2:179597302;179597301;179597300 |
N2A | 4252 | 12979;12980;12981 | chr2:178732575;178732574;178732573 | chr2:179597302;179597301;179597300 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/Y | rs373848201 | -1.371 | 0.116 | N | 0.439 | 0.279 | None | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | N | None | 1.29316E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
C/Y | rs373848201 | -1.371 | 0.116 | N | 0.439 | 0.279 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
C/Y | rs373848201 | -1.371 | 0.116 | N | 0.439 | 0.279 | None | gnomAD-4.0.0 | 2.56283E-06 | None | None | None | None | N | None | 3.38375E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/A | 0.5073 | ambiguous | 0.5858 | pathogenic | -1.498 | Destabilizing | 0.963 | D | 0.572 | neutral | None | None | None | None | N |
C/D | 0.8136 | likely_pathogenic | 0.9059 | pathogenic | 0.474 | Stabilizing | 0.999 | D | 0.676 | prob.neutral | None | None | None | None | N |
C/E | 0.8702 | likely_pathogenic | 0.9324 | pathogenic | 0.614 | Stabilizing | 0.999 | D | 0.672 | neutral | None | None | None | None | N |
C/F | 0.1979 | likely_benign | 0.2397 | benign | -0.957 | Destabilizing | 0.921 | D | 0.619 | neutral | N | 0.42392635 | None | None | N |
C/G | 0.2803 | likely_benign | 0.3669 | ambiguous | -1.816 | Destabilizing | 0.993 | D | 0.654 | neutral | N | 0.485092239 | None | None | N |
C/H | 0.5225 | ambiguous | 0.612 | pathogenic | -1.878 | Destabilizing | 0.991 | D | 0.675 | neutral | None | None | None | None | N |
C/I | 0.4251 | ambiguous | 0.4893 | ambiguous | -0.675 | Destabilizing | 0.984 | D | 0.618 | neutral | None | None | None | None | N |
C/K | 0.8419 | likely_pathogenic | 0.9151 | pathogenic | -0.181 | Destabilizing | 0.995 | D | 0.669 | neutral | None | None | None | None | N |
C/L | 0.494 | ambiguous | 0.5748 | pathogenic | -0.675 | Destabilizing | 0.927 | D | 0.591 | neutral | None | None | None | None | N |
C/M | 0.6853 | likely_pathogenic | 0.7412 | pathogenic | -0.062 | Destabilizing | 0.999 | D | 0.631 | neutral | None | None | None | None | N |
C/N | 0.6071 | likely_pathogenic | 0.7259 | pathogenic | -0.318 | Destabilizing | 0.999 | D | 0.692 | prob.neutral | None | None | None | None | N |
C/P | 0.9212 | likely_pathogenic | 0.968 | pathogenic | -0.923 | Destabilizing | 0.999 | D | 0.693 | prob.neutral | None | None | None | None | N |
C/Q | 0.6825 | likely_pathogenic | 0.7874 | pathogenic | -0.074 | Destabilizing | 0.999 | D | 0.695 | prob.neutral | None | None | None | None | N |
C/R | 0.455 | ambiguous | 0.5932 | pathogenic | -0.436 | Destabilizing | 0.994 | D | 0.695 | prob.neutral | N | 0.474221884 | None | None | N |
C/S | 0.3562 | ambiguous | 0.4384 | ambiguous | -0.894 | Destabilizing | 0.979 | D | 0.613 | neutral | N | 0.491018134 | None | None | N |
C/T | 0.4815 | ambiguous | 0.5517 | ambiguous | -0.543 | Destabilizing | 0.984 | D | 0.62 | neutral | None | None | None | None | N |
C/V | 0.4084 | ambiguous | 0.4363 | ambiguous | -0.923 | Destabilizing | 0.969 | D | 0.606 | neutral | None | None | None | None | N |
C/W | 0.4836 | ambiguous | 0.5617 | ambiguous | -0.97 | Destabilizing | 0.999 | D | 0.617 | neutral | N | 0.514068352 | None | None | N |
C/Y | 0.2443 | likely_benign | 0.2874 | benign | -0.882 | Destabilizing | 0.116 | N | 0.439 | neutral | N | 0.419461893 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.